BAC Information

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BAC

Clone NameMSMg01-418E01
ChromosomeX (Build37)X (Build37)
Map Location 38,900,588 - 38,901,18039,118,852 - 39,119,217
singlet/doubletsingletsinglet
Overlap geneGria3
Upstream geneLOC385344
Downstream geneLOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418E01.T7 (MSMg01no418_e01.b1)MSMg01-418E01.TJ (MSMg01no418_e01.g1)
ACCAG513634AG513635
length746846
length of high quality
(start - end)		597 (49 - 645)366 (150 - 515)
definitionCHROMAT_FILE: MSMg01no418_e01.b1 PHD_FILE: MSMg01no418_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:24 2005CHROMAT_FILE: MSMg01no418_e01.g1 PHD_FILE: MSMg01no418_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:24 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,900,588 - 38,901,180)(39,118,852 - 39,119,217)
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCATGTTCACACACCTCCGCTTTTCTCGTTACTGTAACCTT
AGGTAGTACATGTGGATCAATCAACTTCCTTTGAGGAGCAACTAGATTTT
CAGCATCATGTAAAATAATTACATAGAAATTCATAACCTATTCATAACCA
CCTATATAGTATAATTCATATCTAAACTATTGATAATAGTGGATAGAATA
TAAGTGCTACACGTGGGATTATCCGTGGGATAATGGCAAGCAGAGGCTCT
GTATGCATTTAGTAAAGATGTGGGTTTTTGAAAGTATTTTTGATCCCATG
TTGGGTGAATTTGTAGGTACAAAACCAGAAGTTACAGAAGGCTAACTGCA
ATTCTTAACGTCCCTGTCTATCATCTATCCAGAAAGTTATCCCCTTAAAT
AGATTTACATGATCTCCACTTGTTCTTCACCATATTTTCTCTTTTTCTAA
ACATTATTATTAGTATATTCTCTGCCTGAGTTATAACATGAACTAAATGG
GATGAAGCAATATGTTTAAGTTTTCTACCCAGCAAAATGCTAAAATGTAT
GGATTTCTCCCAGTACTCTCTCATGCCAACTTATCTCTTCATGGGGGATC
TAATAGAGTCCCTTGGGAAAACAGTCTAGAAGCAGATCGACCCCTAGCCT
TTCCTCTCAATGCTCCCATGTTAATAGTACATTTGACTTATTACTN

GGTTATGTGAGTAGGTGTCTCAGTTCCTCCAGCAGAGCCCTTTATATAGC
TNNNANNNNGGGAACCTGATTCATCCATGATAXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
AGGTTGCTGTGGGCAAGCACCGAGCTGGGTTAACTCCCATACTAACTGTG
AGAATGACGGGATGGTATCTTTCCAGGAACAGAGACTAGAATAACTTCTC
AGCATGGCAATAAGGTCAGGTACAGGCTAGGGAAAAACAAACTGGAGAAA
CCCCAGTGAAGGAGTCTTGCTGGCAAGCCAGGGTCTTCCATGAAGAGGAA
GACCCAGAGCCCAGAAATGGTGCTGCTTATATAGGCCTATGAGTGACGTG
TCCATACCTGATTGGTTATGCTACCAGTACCTCATTAATATGCGTAGGGC
CAGGCAGTGACTCGGCAAAAAAACTCTTATGCACATGCGCACATTGGTTG
TTAACCCATAATCATGGGCAGTGGCTAGTGGTAGCCAGTGCCATCTTGCA
ATGGTGTTTGCGTCTTTTCACAAAGGAGGATTTTTGAGCTCCCTGTACCC
TACAGATACTGCCTCAAGCACCTATCCTGCACCCTGGTACCATGGTATGC
TCAGTCAATTTCGTTCCCCATTGGCGTTTTTTTCATTGTACTCTTGACCT
GCTTTTTGAACTCCTCTCCCAGGTTCCTTATCCTCCTTTTATCTCCCTCT
CCTGTTCCAACCTTCTAATCCCTGCTTCTCACCTAATTACTCCTTCTCCG
CGCTACCTTTCCTTTCCGATATCCACCCCGTTTTCTCCTCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_e01.b1 MSMg01no418_e01.b1 CHROMAT_FILE:
MSMg01no418_e01.b1 PHD_FILE: MSMg01no418_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:24 2005
         (597 letters)



>mm_chrX_38900384_38901380
          Length = 997

 Score = 1131 bits (585), Expect = 0.0
 Identities = 591/593 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatgttcacacacctccgcttttctcgttactgtaaccttaggtagtacatg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcatgttcaaacacctccgcttttctcgttactgtaaccttaggtagtacatg 264

                                                                       
Query: 65  tggatcaatcaacttcctttgaggagcaactagattttcagcatcatgtaaaataattac 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggatcaatcaactccctttgaggagcaactagattttcagcatcatgtaaaataattac 324

                                                                       
Query: 125 atagaaattcataacctattcataaccacctatatagtataattcatatctaaactattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagaaattcataacctattcataaccacctatatagtataattcatatctaaactattg 384

                                                                       
Query: 185 ataatagtggatagaatataagtgctacacgtgggattatccgtgggataatggcaagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataatagtggatagaatataagtgctacacgtgggattatccgtgggataatggcaagca 444

                                                                       
Query: 245 gaggctctgtatgcatttagtaaagatgtgggtttttgaaagtatttttgatcccatgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggctctgtatgcatttagtaaagatgtgggtttttgaaagtatttttgatcccatgtt 504

                                                                       
Query: 305 gggtgaatttgtaggtacaaaaccagaagttacagaaggctaactgcaattcttaacgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggtgaatttgtaggtacaaaaccagaagttacagaaggctaactgcaattcttaacgtc 564

                                                                       
Query: 365 cctgtctatcatctatccagaaagttatccccttaaatagatttacatgatctccacttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctgtctatcatctatccagaaagttatccccttaaatagatttacatgatctccacttg 624

                                                                       
Query: 425 ttcttcaccatattttctctttttctaaacattattattagtatattctctgcctgagtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcttcaccatattttctctttttctaaacattattattagtatattctctgcctgagtt 684

                                                                       
Query: 485 ataacatgaactaaatgggatgaagcaatatgtttaagttttctacccagcaaaatgcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataacatgaactaaatgggatgaagcaatatgtttaagttttctacccagcaaaatgcta 744

                                                                
Query: 545 aaatgtatggatttctcccagtactctctcatgccaacttatctcttcatggg 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaatgtatggatttctcccagtactctctcatgccaacttatctcttcatggg 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no418_e01.g1 MSMg01no418_e01.g1 CHROMAT_FILE:
MSMg01no418_e01.g1 PHD_FILE: MSMg01no418_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:24 2005
         (366 letters)



>mm_chrX_39118652_39119417
          Length = 766

 Score =  661 bits (342), Expect = 0.0
 Identities = 360/366 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggttgctgtgggcaagcaccgagctgggttaactcccatactaactgtgagaatgacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggttgctgtgggcaagcaccgagctgggttaactcccatactaactgtgagaatgacg 260

                                                                       
Query: 61  ggatggtatctttccaggaacagagactagaataacttctcagcatggcaataaggtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatggtatctttccaggaacagagactagaataacttctcagcatggcaataaggtcag 320

                                                                       
Query: 121 gtacaggctagggaaaaacaaactggagaaaccccagtgaaggagtcttgctggcaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacaggctagggaaaaacaaactggagaaaccccagtgaaggagtcttgctggcaagcc 380

                                                                       
Query: 181 agggtcttccatgaagaggaagacccagagcccagaaatggtgctgcttatataggccta 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 agggtcttccatgaagaggaagacccagagcccagaaatagtgctgcttatataggccta 440

                                                                       
Query: 241 tgagtgacgtgtccatacctgattggttatgctaccagtacctcattaatatgcgtaggg 300
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ggagtggcgtgtccatacctgattggttatgctaccagtacctcattaatatgcgtagga 500

                                                                       
Query: 301 ccaggcagtgactcggcaaaaaaactcttatgcacatgcgcacattggttgttaacccat 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ccaggcagtgactcggcaaaaaagctcttatgcacatgcgcacattggttgtttacccat 560

                 
Query: 361 aatcat 366
           ||||||
Sbjct: 561 aatcat 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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