BAC Information

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BAC

Clone NameMSMg01-420M24
ChromosomeX (Build37)
Map Location 141,108,690 - 141,109,179
singlet/doubletsinglet
Overlap geneTrpc5
Upstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, LOC100039436
Downstream geneZcchc16, LOC666655, LOC623591, Lhfpl1, Amot, EG434860, LOC100039313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420M24.T7 (MSMg01no420_m24.b1)MSMg01-420M24.TJ (MSMg01no420_m24.g1)
ACCAG515588AG515589
length756759
length of high quality
(start - end)		294 (257 - 550)490 (68 - 557)
definitionCHROMAT_FILE: MSMg01no420_m24.b1 PHD_FILE: MSMg01no420_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:46 2005CHROMAT_FILE: MSMg01no420_m24.g1 PHD_FILE: MSMg01no420_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTAAAATTGTGGGCGCTATAAGAGTCCCATATTCTCAGAGGAGCGNA
GATNCCGTATTTCCCCCATCATAAGGAGCATTGAGATAACAGTGGTGTCT
CTAAGATATTATGTTTGGGGAAAGGGAGATCTATATCTAGAGAAGAGAGT
GCTCTTTATGCTTTTAAGAGCACCCCCAAAAAATCTCTGAGACCCTGATG
GATGATTTAAAATACTCTTCCCACTTGAAAATATATCTTTGGAGACTTAC
TCTGTTTTCAGGCCAATAAAGAAAGCAGGAAAATCTGGGGTCACAGATGA
GTGAGTAGAGTGCTTGTCTTACGTGCACAAAGCTTTGGTTTCAGTAACCA
GAACCTGAACCTGAATAGGCTGGTGAATCCCTGTAATCTTAGCTCCTTGG
AGATGGAGACAGGAACATCAGTTCAAGGAATATATATATATATATATATA
TATATATATATATATATACATACATATATATTATATATATAAAATCTCCA
GTATGTGTGTGTATATATATATATATATATATATATATATATATATTATA
TATATAAAATCCTCCCGCATGTGCATATTATATATATATATATATATATT
ATACCAAACAAACCCCCCCGTAGCGAAAATTAATTTCGCTGCTTTATTTC
CTCTTTTATTAACACCCTCCACGCCCCCCCCCCGTCCTTTTTCTTACTTC
TTCTCTATCCTCTTCCTCTCGTCCGTTCCCCCATAACTAACCCCCCCCTC
TTCTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGGAAAAGATTAAAGAATTGAGAAGAAATTAT
GGGAGGTCATATACATCACTATGTAAAATTTTAATCTCTGAAAAAAATAG
GCTAAAAGTATCCAAAGGAAAAAGTCAGCAGAATGAGAGCCACAAATAAA
AATTGAACTTCAATCAACCATGTTTACTGGAGAAGGGGGAGCCAGGGAAA
AAGTGGCTGAAAGCTAAGCGAGGCTTATGCAAGGCACTTCAGAGGATGCT
CAGAGAAGAGCATTTGATGCACTCTATGATGCAGCCTGCACATTTGTGAC
AGATGCATTTTAAAGTATGAAATGTGAAATAATGACATTCAATTGCAAAA
TGTAAGTCTGCAGTGTTAATGGGGCGTTGGAGACATGGCTCAGCAGCTAA
GAACACTTGCAGCTCTTGCAGAGACCTCAGTTTGAATCCCAGCACCAACA
TGGTGGCTTATACCCACCTATATCTCCAGTTCCAGAGACTCTGGAAACCT
CTTTTCGCCTCCTTTGGCATGCATGCATATATACNTCAAATAATAACCCC
CTTAAAAAAGAAAAGAAAAATACCTTTTTTTAAAGAAATATCTTTTATTG
ACTANAAAAAACTGAAAGGTTCACGCATGTTTTACAACTTGGAAGAAGAG
GACTTTGGGGATGATTAAGGGGACCATTTCCAAAAAAAAATTGGGGATCC
AAGGGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_m24.g1 MSMg01no420_m24.g1 CHROMAT_FILE:
MSMg01no420_m24.g1 PHD_FILE: MSMg01no420_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:46 2005
         (490 letters)



>mm_chrX_141108627_141109516
          Length = 890

 Score =  948 bits (490), Expect = 0.0
 Identities = 490/490 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggaaaagattaaagaattgagaagaaattatgggaggtcatatacatcactatgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaggaaaagattaaagaattgagaagaaattatgggaggtcatatacatcactatgtaaa 494

                                                                       
Query: 61  attttaatctctgaaaaaaataggctaaaagtatccaaaggaaaaagtcagcagaatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 attttaatctctgaaaaaaataggctaaaagtatccaaaggaaaaagtcagcagaatgag 434

                                                                       
Query: 121 agccacaaataaaaattgaacttcaatcaaccatgtttactggagaagggggagccaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agccacaaataaaaattgaacttcaatcaaccatgtttactggagaagggggagccaggg 374

                                                                       
Query: 181 aaaaagtggctgaaagctaagcgaggcttatgcaaggcacttcagaggatgctcagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaaagtggctgaaagctaagcgaggcttatgcaaggcacttcagaggatgctcagagaa 314

                                                                       
Query: 241 gagcatttgatgcactctatgatgcagcctgcacatttgtgacagatgcattttaaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gagcatttgatgcactctatgatgcagcctgcacatttgtgacagatgcattttaaagta 254

                                                                       
Query: 301 tgaaatgtgaaataatgacattcaattgcaaaatgtaagtctgcagtgttaatggggcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgaaatgtgaaataatgacattcaattgcaaaatgtaagtctgcagtgttaatggggcgt 194

                                                                       
Query: 361 tggagacatggctcagcagctaagaacacttgcagctcttgcagagacctcagtttgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tggagacatggctcagcagctaagaacacttgcagctcttgcagagacctcagtttgaat 134

                                                                       
Query: 421 cccagcaccaacatggtggcttatacccacctatatctccagttccagagactctggaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 cccagcaccaacatggtggcttatacccacctatatctccagttccagagactctggaaa 74

                     
Query: 481 cctcttttcg 490
           ||||||||||
Sbjct: 73  cctcttttcg 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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