BAC Information

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BAC

Clone NameMSMg01-420P10
ChromosomeX (Build37)
Map Location 85,223,040 - 85,223,283
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl1, LOC667876
Downstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420P10.T7 (MSMg01no420_p10.b1)MSMg01-420P10.TJ (MSMg01no420_p10.g1)
ACCAG515704AG515705
length726766
length of high quality
(start - end)
244 (320 - 563)178 (69 - 246)
definitionCHROMAT_FILE: MSMg01no420_p10.b1 PHD_FILE: MSMg01no420_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:57 2005CHROMAT_FILE: MSMg01no420_p10.g1 PHD_FILE: MSMg01no420_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTTCAATTTTGGGGGGGAAAGAAGANTAAACTACGAGAGCAGNGGN
AGAANTCCTTTTTACTAAAAGAGACGATANTATTATTCACCAAGAGAGTA
AGAGTTTCATTCAGACTCTCTGCTCCTGTTGAGGAAGTGTAATACTCTAT
ACATCGTGCTCATATATGTGTCAGTGTTAATAGTTATCTATTCAGATCAG
TGTAGGCCTTTGAGTAGAGTGTTGACGTAAAGTCTGAATAAAACCCTCTT
TCTTAAAAATTAAACAATTATCAAAATTTCTTGGAGAATAGGTGGAGCTC
CTTTGACTCTACTTTTTTAGTTTTATTTCACGTGGTTGCCTTATTCTTGT
ATAAGATTTTGTTGTTAAACTAAAGGTTATTTTTGTAATACAAAAACATA
TTAAGTGTTAATAATGTGTTATACACTGTGTCAAAGACTAATTCTAGTTC
CATCCTTGTCATGTCTGTAAATATAATCTGGTATATAATAAATAATGAGT
TGTGGAAAAAATGAAAAATGAATGCCCATGCTGGCAAGCTGTGAAGATGA
AAGTAATTAATACATAAGAATTTGTATTCATGACTACAACATTTTTTGCT
ATGGACATCATCAATAATGGCTCCAGTGCTATGGACTGCTGAGTAATTGA
TCTAACAAACTTATGATTGGAGTCCGGGTGGCCCCGCATACTGAAGGAGA
ACAACATTCTTCCCCAAAATAAACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATAAAAATGAAGGCACAACACACCCAAAAAT
ATGGGACACAATGAAAGCAGTGCTAATGGGAAAGTTCATAGAACTGTCTC
CATAAAGAAATTGGAGAGTTCTTGTACTAATTTAAAAGTTTACCTTAAAG
CTCTAGAAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGNNNTN
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTNNTNNTNNTNNTTNNNNNCTNTNNNTTTTTTTTTTTTTTTTTTTTTT
TTTNNNNNNNTTNTTNTTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTNTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTNNTTTTTNTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNT
TTNTNNTTTTTTTTTTTTTTTTTTTTTTNNNTNTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTNNNNTTTTTTTTTTT
TTTTTTTTTTTTTTNNNNNNNTTTNTTTTTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTT
NTTTTTTTTNTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_p10.b1 MSMg01no420_p10.b1 CHROMAT_FILE:
MSMg01no420_p10.b1 PHD_FILE: MSMg01no420_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:57 2005
         (244 letters)



>mm_chrX_85222840_85223483
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttttatttcacgtggttgccttattcttgtataagattttgttgttaaactaaaggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttttatttcacgtggttgccttattcttgtataagattttgttgttaaactaaaggtta 385

                                                                       
Query: 61  tttttgtaatacaaaaacatattaagtgttaataatgtgttatacactgtgtcaaagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttttgtaatacaaaaacatattaagtgttaataatgtgttatacactgtgtcaaagact 325

                                                                       
Query: 121 aattctagttccatccttgtcatgtctgtaaatataatctggtatataataaataatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattctagttccatccttgtcatgtctgtaaatataatctggtatataataaataatgag 265

                                                                       
Query: 181 ttgtggaaaaaatgaaaaatgaatgcccatgctggcaagctgtgaagatgaaagtaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgtggaaaaaatgaaaaatgaatgcccatgctggcaagctgtgaagatgaaagtaatta 205

               
Query: 241 atac 244
           ||||
Sbjct: 204 atac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)