BAC Information

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BAC

Clone NameMSMg01-421H22
ChromosomeX (Build37)
Map Location 150,020,539 - 150,020,945
singlet/doubletsinglet
Overlap genenone
Upstream geneShroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253, Mageh1, EG385454, EG436240, Rragb, Klf8, LOC100039932, EG635136, Ubqln2, Cypt3
Downstream geneLOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421H22.T7 (MSMg01no421_h22.b1)MSMg01-421H22.TJ (MSMg01no421_h22.g1)
ACCAG516108AG516109
length758779
length of high quality
(start - end)		473 (50 - 522)407 (81 - 487)
definitionCHROMAT_FILE: MSMg01no421_h22.b1 PHD_FILE: MSMg01no421_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:41 2005CHROMAT_FILE: MSMg01no421_h22.g1 PHD_FILE: MSMg01no421_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATC
CGCGGAATTCAGCATAGCGTTCACTATTGACTTATTCAAACATCAGCAGA
AAAATTACATGTACATGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCA
GTTCAGATAGCCCTGTTATGTCTTCACATTCTCCTTTATCTTATGGTCAA
GATGTTCCCAAGAATGTTTTAACTACAGGGCATACCCGGGTTTGTTTTTC
TTTGTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAATCAGCAATTT
CTGAGTACTTTATATGACTTACAGGTCTTGAAGTTTCACCTTTCTTTTCA
CATTTTCTTGGAATATCTTTTTCCAATCCTTTACCCTGAGGTAATGTCTA
TCCTTGGTGTTTATGTGTGTTTCTTGGATGCAGCAGGAGAATTGGTCCTG
TTTTCACATCCACTCTGTTAGTCTGTGACTTTTTATTGGGAAATTGAGAG
CTATCAATGACCAATGATTGTTAGTTCTGGGTATTTTTGTTGATTTTGGG
GTGGNGGTGGTGNNNNNNNTTTNTNNTTTTTTTTTTTTTTTTTNTTTTTT
TNTTTTTTTTTTTTTTTTTTNTTNNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTT
TTTTCTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTCTTTTTTTTTTT
TTCTCCTG

NNNNTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAAGAGCAGATTTC
TTGTTTGGATGTAGAAATGGTGTATACAAGAATAATTGAATCAATCCCCA
ATAGCACAAAAGCAATCATTTAAATAAGAATGGAAAGTAGAGATACTATT
GCTGAGCTTAATTGACAAAGGTGATTACAGGATAGTATTGTGCACAACTA
CATACTAGAAATGCCATTATCTAGGTGAGTATATAAATGCCTCAAAAAAT
ACAAGTTACCAAATCTAACCTAAGAAAGAATGGAAATGGAAAACCTTAAC
AGATATATAATGGATATGAGCCCCCCAACACACATATAGTTGAGGACTTC
TGGGTCTGTGTTCATTCAGAGATGATGCACCTAACCCTCAAGAGACTGGA
GGCCCTGGGGAGTTTAGAGGTCAGGTGGGTTGGAGATGGGGNCATCCATG
TGGAGATGGGGTGGGGTGTANAANTTNTTNTTTTTTTTTNNTTTTTTTTT
TTTTTTTTTNTTTTTTNTTTTTTTTTTNGTTNTTTTTTTTTTTTTTTTTT
TNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTT
TNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNGTTTTTTTTTGTTTTTTTTNTTNGTTTN
TTTTTTTTTTTTTTTTTTTTTTTTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_h22.g1 MSMg01no421_h22.g1 CHROMAT_FILE:
MSMg01no421_h22.g1 PHD_FILE: MSMg01no421_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:41 2005
         (407 letters)



>mm_chrX_150020339_150021145
          Length = 807

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttaagagcagatttcttgtttggatgtagaaatggtgtatacaagaataattgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttaagagcagatttcttgtttggatgtagaaatggtgtatacaagaataattgaa 260

                                                                       
Query: 61  tcaatccccaatagcacaaaagcaatcatttaaataagaatggaaagtagagatactatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tcaatccccaatagcacaaaagcaatcatttaaataagaatggaaaggagagatactatt 320

                                                                       
Query: 121 gctgagcttaattgacaaaggtgattacaggatagtattgtgcacaactacatactagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgagcttaattgacaaaggtgattacaggatagtattgtgcacaactacatactagaa 380

                                                                       
Query: 181 atgccattatctaggtgagtatataaatgcctcaaaaaatacaagttaccaaatctaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgccattatctaggtgagtatataaatgcctcaaaaaatacaagttaccaaatctaacc 440

                                                                       
Query: 241 taagaaagaatggaaatggaaaaccttaacagatatataatggatatgagccccccaaca 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 taagaaagaatggaaatggaaaaccttaacagatatatagtggatatgagccccccaaca 500

                                                                       
Query: 301 cacatatagttgaggacttctgggtctgtgttcattcagagatgatgcacctaaccctca 360
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatatagtagaagacttctgggtctgtgttcattcagagatgatgcacctaaccctca 560

                                                          
Query: 361 agagactggaggccctggggagtttagaggtcaggtgggttggagat 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagactggaggccctggggagtttagaggtcaggtgggttggagat 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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