BAC Information

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BAC

Clone NameMSMg01-421M07
ChromosomeX (Build37)
Map Location 121,308,079 - 121,308,327
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421M07.T7 (MSMg01no421_m07.b1)MSMg01-421M07.TJ (MSMg01no421_m07.g1)
ACCAG516317AG516318
length782776
length of high quality
(start - end)
249 (73 - 321)522 (76 - 597)
definitionCHROMAT_FILE: MSMg01no421_m07.b1 PHD_FILE: MSMg01no421_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:04 2005CHROMAT_FILE: MSMg01no421_m07.g1 PHD_FILE: MSMg01no421_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:04 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCAAAAACACTTTCCGCAATCTTCTCTGGTAAGGTTCAGACCTACAGCT
TAAGAACCACAGATCTTCTAAACTACTGTATGTACCAAGGGGACTTCTGA
TCTGCCCATTCTGAACCAGGGATCCTCAGATCATCCCCAATAGCCTAAGT
GAACTTCAACTTAACTGTTTAGAACCAATGTGCTGGGGTTGGAGAGATGG
CTCTTCAGTTATAAACACTGACTGCTCTACCACAGGTCCTGAGTTCAATT
CTCAGTAACCACGTGTTGTCTCATAATCATCTGTCATGGGACCCGATGCC
ACCTTATGGTGTGTCTGAAGACAATATCAGTATACCCACACACATGAAAA
ATAACCGATGTGACTCACAACTTCCACCAATAACTCAAGGGGGTTTCAGA
TGCAACCCCTGAAATCAAATATGTTAGAAACTCCCCAGTATTGAAGGCAG
CATTAACTTATTGAGAACCTGATATCCCATAAATTCCTTATTTCCCCCCA
GAATTACCTCTTATGATCTATGTTGTCTTTTACGGTCCTCCATTATCTGT
ATATGCCCTGTATCCCTTTGACTTGTTTTTACTAGGTATTTTTTATACTC
CACACAACTTTATCTATTTTTTTTTATATGTGTTCCTTTCACTATCTCCT
TTGCTTTATTTTCTGTCTGCACTCCCCCATGGTGTTTTCTCTCCATTTTT
CTCCTGTTTATCACCCCTTTTTTTATCTCACT
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGCTAAACTCCAGAAAAACAA
ACACCCTAACGAAAAAATGATCTCTAGAGCTAAACAAAATTCTCAATTTA
GGAATCTCAAAAGCCTGAGAAGCACCTAAAGAAATGTTCAACATCCTTAT
TTATAGTGAAACACAAATCAAAACCACGCTGAGATTCCATCCTAAATCAA
TGAGAATGGTTGAGACCAAAATGTAAGGGGAAAATAGCTGCTAGAGCAAA
TGTCGATAAAAAGAAAACTTTATCTTTTCTTGTGGGATTGAAAAGTGTTT
TCCAGATTCCAAAATCTGGAAAATATTATGGCATTTCTTCACAAAATTGG
AAATAAGTCTATCTGAATATTCATATATACAACTTCTGGGCATATATCCC
AAAAATCTCTACCATACCATAAGTAAACCTTCAGTATTTACAGCACCCTT
AATTATAATAGCGGGGGTTCAGGGACTATGCCGAACTTAGGAAATTAATC
TGAACAGGTGAGAGGGTGCAACACAGAACTGGAGAGCTTCTGGGACAGGC
GGAGCCACAGAACCGCTGAGGCAGCACCCTTTTTCGGGTCGCAAACTGCC
CGGCCACCCTCCCAATCAGATGACACGTATCCTGCCTGGGTTCCGGAAGC
CTTCACACTCAGGAACATCGTGGTGCCACCCTTCGTTCCTGGACCGCCCG
CCCATACTTATTATCCTTCTTCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_m07.b1 MSMg01no421_m07.b1 CHROMAT_FILE:
MSMg01no421_m07.b1 PHD_FILE: MSMg01no421_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:04 2005
         (249 letters)



>mm_chrX_121307966_121308614
          Length = 649

 Score =  339 bits (175), Expect = 1e-97
 Identities = 232/251 (92%), Gaps = 4/251 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctggtaaggttcagacctacagcttaagaaccacagatcttctaaactactgtatg 60
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 362 ttctctggtaaggttcagacctacaacttaagaaccacagatcttccaaactactgtatg 303

                                                                       
Query: 61  taccaaggggacttctgatctgcccattctgaaccagggatcctcagatcatccccaata 120
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gaccaagggaacttctgatctgcccattctgaaccagggatcctcagatcatccccaata 243

                                                                       
Query: 121 gcctaagtgaacttcaa-cttaactgtttagaaccaatgtgctggggttggagagatggc 179
           |||||||||| ||| || |||| |||| ||| ||||||||||||||| ||||||||||||
Sbjct: 242 gcctaagtgacctt-aatcttacctgtctaggaccaatgtgctggggctggagagatggc 184

                                                                       
Query: 180 tcttcagttataaa-cactgactgctctaccacaggtcctgagttcaattctcagtaacc 238
           ||  |||||| ||| ||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct: 183 tcagcagtta-aaagcactgactgttcttccacaggtcctgagttcaattctcagcaacc 125

                      
Query: 239 acgtgttgtct 249
           || ||||||||
Sbjct: 124 acttgttgtct 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)