Query= MSMg01no422_b16.b1 MSMg01no422_b16.b1 CHROMAT_FILE:
MSMg01no422_b16.b1 PHD_FILE: MSMg01no422_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:29 2005
(580 letters)
>mm_chrX_165863479_165864459
Length = 981
Score = 1040 bits (538), Expect = 0.0
Identities = 568/578 (98%), Gaps = 3/578 (0%)
Strand = Plus / Minus
Query: 5 gaattcaccatcttcccgtaagaatacacttgagaaaaagct-agcctctataaaatata 63
||||||||||||| | ||||||||| ||||||||||||||| || ||||||||||||||
Sbjct: 668 gaattcaccatctacttgtaagaatatacttgagaaaaagctaag-ctctataaaatata 610
Query: 64 aacacaaactttttcttacaagttattatacaatatattaaatttataacaactaaaact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aacacaaactttttcttacaagttattatacaatatattaaatttataacaactaaaact 550
Query: 124 aaatcattttggcaaacagattaatggagcagaacaaatatgtaaattattgaatataaa 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 549 aaatcattttggcaaacagattaatggagcagaacaaatatgcaaattattgaatataaa 490
Query: 184 ataataaaagagttcaagttagtaaaaatggactaatatgttaattagctcactgataaa 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ataataaaatagttcaagttagtaaaaatggactaatatgttaattagctcactgataaa 430
Query: 244 taataatagagtaaatggctaactactttgaatatatgcttataggtgtatcagaacaaa 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 429 taataatagagtaaatggctaactactttgaagatatgcttataggtgtatcagaacaaa 370
Query: 304 gtataagggtcattgcattttataatcagac-agaatacatattgcacatttaacaatat 362
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 369 gtataagggtcattgcattttataatcagacaagaatacatattgcacatttaacaatat 310
Query: 363 ctcagaaactcaaggctactcaaaggttaaggtctggtatcttagggttactattgctgt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctcagaaactcaaggctactcaaaggttaaggtctggtatcttagggttactattgctgt 250
Query: 423 ggtgtagggttactgtactgtggtgtactgttaccaaagaaaacatgggcatttcccttc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggtgtagggttactgtactgtggtgtactgttaccaaagaaaacatgggcatttcccttc 190
Query: 483 aatcactaattaagaaaacactttacagatgggtctttcgaaagtattttctcaattgag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aatcactaattaagaaaacactttacagatgggtctttcgaaagtattttctcaattgag 130
Query: 543 gttccctcctttctgatgactctagcttgtgtcaagtt 580
||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gttccctcctttctgatgactctagcttgtgtcaagtt 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_b16.g1 MSMg01no422_b16.g1 CHROMAT_FILE:
MSMg01no422_b16.g1 PHD_FILE: MSMg01no422_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:29 2005
(531 letters)
>mm_chrX_165675130_165676061
Length = 932
Score = 990 bits (512), Expect = 0.0
Identities = 527/532 (99%), Gaps = 1/532 (0%)
Strand = Plus / Plus
Query: 1 tatgaccgaggtaaaatgtcaactctacttgtaacgtgaaaa-tcaaatgaatacttttt 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tatgaccgaggtaaaatgtcaactctacttgtaacgtgaaaaatcaaatgaatacttttt 260
Query: 60 ttttcaatttcttgttctttttctattcacagatggacaaaagagaaagaaatctttgag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcaatttcttgttctttttctattcacagatggacaaaagagaaagaaatctttgag 320
Query: 120 aaagaaactggattcactagggaaggaaaagaacaaagacaaaggtaaaggaccaaataa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaaactggattcactagggaaggaaaagaacaaagacaaaggtaaaggaccaaataa 380
Query: 180 ctaaatcaaatgcattttgtagggagcatgcttgttggattgggttgagactttgaattg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaatcaaatgcattttgtagggagcatgcttgttggattgggttgagactttgaattg 440
Query: 240 catagatttatgtttttgtgctctattatgtcaactacatttgcataacagaatgtcatt 299
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catagatttatgtggttgggctctattatgtcaactacatttgcataacagaatgtcatt 500
Query: 300 gagagacgtttctatctacttttctgtgtttgagtatctctgcgctgaactgatgagttc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagagacgtttctatctacttttctgtgtttgagtatctctgcgctgaactgatgagttc 560
Query: 360 agctggtttgagcagttggtgaccacagccaaggttgtggttccaattaatctgtccaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctggtttgagcagttggtgaccacagccaaggttgtggttccaattaatctgtccaat 620
Query: 420 cagctatgcttaaagaggacctgctttgagtagccatggatagcatgcctaatactaacc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagctatgcttaaagaggacctgctttgagtagccatggatagcatgcctaatactaacc 680
Query: 480 agctgtttggcaaatacagacaattaagcaggaataattaattgagaaagtt 531
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 agctgtttggcaaatacagacaattaagcaggaataattaaatgagaaagtt 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
