BAC Information

Click to search

BAC

Clone NameMSMg01-423C12
ChromosomeX (Build37)
Map Location 143,450,344 - 143,450,521
singlet/doubletsinglet
Overlap geneHtr2c
Upstream geneLOC237096, LOC100039558, EG666730, EG245663
Downstream geneIl13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423C12.T7 (MSMg01no423_c12.b1)MSMg01-423C12.TJ (MSMg01no423_c12.g1)
ACCAG517378AG517379
length815728
length of high quality
(start - end)
177 (59 - 235)240 (65 - 304)
definitionCHROMAT_FILE: MSMg01no423_c12.b1 PHD_FILE: MSMg01no423_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:46 2005CHROMAT_FILE: MSMg01no423_c12.g1 PHD_FILE: MSMg01no423_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATATT
GCATGTGAATTTTATGCCATCCAGTTTTACAGCTCCATCTCCCTATCAGG
TCACAAGCATACTTAATGAATGAGGGGGTGGGCAAAGAACCTGAGATAGT
AACAGAGACAGGTGGATACATATGTGTGTATATATATATATATATAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTTTCTCCCTCCTTT
TCCTTCTCCCCTCTTTTCTTGCTGCCTTCTTTCTCTCTTTCACCCATCTT
TTTTTTTTTCTATCCCCCCCCCCTCTATTTTTTTTCTACCTTATCTTTCC
TTCTTCCCCTCCTCTTTCATATTCTTTCTCTTCTTTCCCTCTTCCTCTGT
TTTTTTCCCTTCCCTTTTCCTTCTTCTCCTTCTTTCCCCTCGCTCTTCCC
CCCTTCTCAATCTTTTCCTCTTTTACTTTTTCTCCTCCTTTTCTTTCTCT
TTTCCCCCTTTTTTTCTCCCCTTTTTTTCCTCTCCCCCATTTTCTTTTTT
TTTTTTCCCCCTTCCATTTCTGCCCTTCCTATACTCTTCCCTTTTTTTTT
CCCTATTCCATTCTCTTATTCTCCTTTTTTTCTCGTTCTTTCCCCCTTGC
TCTTCCCCCTCTTTTTCCTCCTTTTTTTTATCGCCCTTTTCCCTTTCCTC
CTCTCTTTCTTTTCCCCCCTTTTTTTTTTTCCTCCCCCCTTCCCGTCTTT
CTTCCTCTTTTTCTTCTCCCCTTTTTTTTCCCCCTATTTTACTCCTTTCC
CCTTTTTTCCTCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAATACTCCTCCAT
TGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTTCTTATAATACTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTTTAATAGCCAGAAGCTGGAAAGA
ACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGGAACTCCCACAATATGTATTCACTGATAAGTGGATATTAGC
CCCAAACCTAGGATACCCCAGATATAAGATATAATTTGCTCAACCATTGA
ACTCTTTAATAATGATTACTGAAGTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_c12.b1 MSMg01no423_c12.b1 CHROMAT_FILE:
MSMg01no423_c12.b1 PHD_FILE: MSMg01no423_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:46 2005
         (177 letters)



>mm_chrX_143450215_143450791
          Length = 577

 Score =  296 bits (153), Expect = 5e-85
 Identities = 169/179 (94%), Gaps = 9/179 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttatgccatccagttttacagctccatctccctatcaggtcacaagcatacttaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 307 attttatgccatccagttttacagctccatctccctatcaggtcacaggcatacttaatg 248

                                                                       
Query: 61  aatgagggggtgggcaaagaacctgagatagtaacagagacaggtggatacatatgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aatgagggggtgggcaaagaacctgagatagtaacagagacaggtggatacatatgtgtg 188

                                                                      
Query: 121 t--------atatatatatatatatagagagagagagagagagagagagagagagagag 171
           |        ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 187 tgtgtatatatatatatatatatatagagagagagagagagagagagagagaga-agag 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)