BAC Information

Click to search

BAC

Clone NameMSMg01-425G22
ChromosomeX (Build37)
Map Location 158,857,628 - 158,858,147
singlet/doubletsinglet
Overlap geneReps2
Upstream genePrkaca-ps1, Rai2, Gm47, Nhs
Downstream geneLOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425G22.T7 (MSMg01no425_g22.b1)MSMg01-425G22.TJ (MSMg01no425_g22.g1)
ACCAG519116AG519117
length764762
length of high quality
(start - end)
516 (35 - 550)466 (65 - 530)
definitionCHROMAT_FILE: MSMg01no425_g22.b1 PHD_FILE: MSMg01no425_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:39 2005CHROMAT_FILE: MSMg01no425_g22.g1 PHD_FILE: MSMg01no425_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAGT
GTTTCATTCTCAGCGTATTGACTAGTTCTGGGTCTCAGTATTAATAGCCA
TCAAAAAGAAGCTTTTTTTATGAGGGTTGAGAGATACACTGATCTATGAG
TATAAACGTAAGAACTTAAGATTCAGTTTAACATTATGTCCATTAAAAAA
TAATAGTATTGGATTTTTCCATAGGGCTTATGACCTAGACAAGCTCCAGC
TGGGGGCCAACTCTCAGTACTGGGCTTTAAATCCAACCAGAATATGATTG
ATAACTCCTATAATATTCATGCCATTGTTGTATCCGTAGGCATAGCTTGC
CAAACCAGTCATTATCATAGCTTGCAGAGTTCAGGTGGGTAAGGTCAGTG
ATTACTTTTGTCCTGTGGAAGTGTGCATAGCACATTTCAGCACCATGAAA
TCTAGTCAGTATAAAATTGAAACTTCCAGTTTAGCACTAGATTCATGTCT
CCATATAATATGACTCAAGTATTGTCCTCAACAATAGAATCTCTTGCCAT
CAAGCCATAAAACCCATTTCTGAACTTCCTTTAGTGAGTAGTCAGTGAAA
ATAGGCACACTTACTTTCTCACTGGTCAGTGTACCCATTATCTAGTACTA
TGCGAAACAAATAAACTCCCTGCTCTTATCCAAACTCTATTTTACTAGTG
AGACAGATAATGAGGCCCATAAATAAGTAAAAATAGTCCCGCCTTAGGGG
AAAATAACCCCCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTGTACTTTTAAAAATTTGCTTTGCTGTTTTTATT
TTATTGCTTTTCTTTCTCTCTTTTTCTTTCTCTCTCTCTCTCTCTCTCTC
TCTTTCTTTCTTTCTTTCTTTCTTTCTATCTTTCTTTCAGCTTGTTTGTC
TGTTTTGATTTTCATTTTTCTTTTCCCTGTGTGAGAGACTGAGAGAACAT
GGCTTTGGATGGGTAGAGAAATAGGATCTGGAACGAGTTGGAGTGCAAAA
TCTATGATCAAAATATGTTGAATGAAGAATGTAAATAAATTTAAAGATAG
ATTAAGAACTTTAAAAAGCCAAATATCTCATTTTAAAAATTGGCAAAGGA
CTGGAACAGATATTTCACCAAAGAGGATATAAGGATGGCATCTATACACA
TAAGATGATATTCTCTGTCATTAGCCACTTAGGAAATGACAAGGTAATCG
TGCATTGCATGCTGCTGTACACTTCCTAGAACTGCTAAAACAAACAATGG
CACTGTCAGTGAACCGCAACTGGAGCCTCATGCGCTGGTGGTGGGACCCA
CAAATAGAAAAATGACTCACCCTGCAAAGTCATTCAGAAGCTTTTGGAGG
GATAGATATCTTTATCCCCCTTTACCCCCTTTTTTTTTCCATTAAATTGG
TGTAAACCGCCGCCTAACCCTTTTTTTTTAGGAAAAAAATTTTTCCACGG
CCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_g22.g1 MSMg01no425_g22.g1 CHROMAT_FILE:
MSMg01no425_g22.g1 PHD_FILE: MSMg01no425_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:39 2005
         (466 letters)



>mm_chrX_158857473_158858338
          Length = 866

 Score =  785 bits (406), Expect = 0.0
 Identities = 466/520 (89%), Gaps = 54/520 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtacttttaaaaatttgctttgctgtttttattttattgcttttctttctctct--- 57
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 675 agtgtacttttaaaaatttgctttgctgtttttattttattgcttttctttctctctttc 616

                                                                       
Query: 58  --------------ttt-tctttctctctctctctctctctctc---------------- 86
                         ||| ||||||||||||||||||||||||||                
Sbjct: 615 tctttctctttctctttctctttctctctctctctctctctctctctctctctctttctc 556

                                                                       
Query: 87  --------------------tctttctttctttctttctttctttctatctttctttcag 126
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tctttctttctttctttctttctttctttctttctttctttctttctatctttctttcag 496

                                                                       
Query: 127 cttgtttgtctgttttgattttcatttttcttttccctgtgtgagagactgagagaacat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cttgtttgtctgttttgattttcatttttcttttccctgtgtgagagactgagagaacat 436

                                                                       
Query: 187 ggctttggatgggtagagaaataggatctggaacgagttggagtgcaaaatctatgatca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggctttggatgggtagagaaataggatctggaacgagttggagtgcaaaatctatgatca 376

                                                                       
Query: 247 aaatatgttgaatgaagaatgtaaataaatttaaagatagattaagaactttaaaaagcc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaatatgttgaatgaagaatgtaaataaatttaaagatagattaagaactttaaaaagcc 316

                                                                       
Query: 307 aaatatctcattttaaaaattggcaaaggactggaacagatatttcaccaaagaggatat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaatatctcattttaaaaattggcaaaggactggaacagatatttcaccaaagaggatat 256

                                                                       
Query: 367 aaggatggcatctatacacataagatgatattctctgtcattagccacttaggaaatgac 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaggatggcatctatacacataagatgatattctctgtcattagccacttaggaaatgac 196

                                                   
Query: 427 aaggtaatcgtgcattgcatgctgctgtacacttcctaga 466
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aaggtaatcgtgcattgcatgctgctgtacacttcctaga 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)