Query= MSMg01no425_j15.b1 MSMg01no425_j15.b1 CHROMAT_FILE:
MSMg01no425_j15.b1 PHD_FILE: MSMg01no425_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:52 2005
(600 letters)
>mm_chrX_16242019_16243018
Length = 1000
Score = 1065 bits (551), Expect = 0.0
Identities = 590/605 (97%), Gaps = 6/605 (0%)
Strand = Plus / Plus
Query: 1 ggcaggaagcatacaggagttcagctaattgacctgctcccagtttgctttcttttatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggcaggaagcatacaggagttcagctaattgacctgctcccagtttgctttcttttatta 256
Query: 61 ctcaggaccacctacacaaaagtggcaccatccacaatgggctggatagtcccatatcaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctcaggaccacctacacaaaggtggcaccatccacaatgggctggatagtcccatatcaa 316
Query: 121 tcattaattatgaaaatgctggggatggagagatggttcagtgattaagagcactgactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcattaattatgaaaatgctggggatggagagatggttcagtgattaagagcactgactg 376
Query: 181 ctcttctgaaggtcctgagttcaaatcccagaaaccacatgttgtctcacaaccatccgt 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 377 ctcttctgaaggtcctgagttcaaatcccagcaaccacatgttgtctcacaaccatccgt 436
Query: 241 aatgagatctgacgcgctcttctggtgcatctgaagacagctacagtgcagttaga---- 296
||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 437 aatgagatctgacgcgctcttctggtgcatctgaagacacctacagtggaattagataga 496
Query: 297 ataataaataaatctttaaaaaaaaa-gaaaatgctacacatgccagtctaatggaggca 355
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 497 ataataaataaatcttaaaaaaaaaaagaaaatgctacacatgccagtctaatggaggca 556
Query: 356 atccctcatttgcagcccccccatttccaagctaactctaactatgtcaagttgacaaaa 415
|||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atccctcagttgcagctcccc-atttccaagctaactctaactatgtcaagttgacaaaa 615
Query: 416 ctaaccagcccatctaccttgttctattttgttgcttcacagtggattgatttcggtatt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctaaccagcccatctaccttgttctattttgttgcttcacagtggattgatttcggtatt 675
Query: 476 ttttttccttaaatgatgcttcataacttctgcaaaggctatatacctcatgtttcaggt 535
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttttctccttaaatgatgcttcataacttctgcaaaggctatatacctcatgtttcaggt 735
Query: 536 aatattttgcatattatatttcagtgcaaatatgtaattagtgccatcccaccggttttg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aatattttgcatattatatttcagtgcaaatatgtaattagtgccatcccaccggttttg 795
Query: 596 actgc 600
|||||
Sbjct: 796 actgc 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_j15.g1 MSMg01no425_j15.g1 CHROMAT_FILE:
MSMg01no425_j15.g1 PHD_FILE: MSMg01no425_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:52 2005
(450 letters)
>mm_chrX_16312707_16313556
Length = 850
Score = 855 bits (442), Expect = 0.0
Identities = 448/450 (99%)
Strand = Plus / Minus
Query: 1 cagaagtttgctaaattgtgctaaatgtagccaaggaaacatgttatttgacgacgctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 cagaagtttgctaaattgtgctaaatgtagccaaggaaacatgttatttgacgacgctag 591
Query: 61 aatcttaagaggactgatctgcatttgctaatcacattcttgtttcttcctgagcagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aatcttaagaggactgatctgcatttgctaatcacattcttgtttcttcctgagcagatc 531
Query: 121 tacaaagcagattgccacgctctttgtgaacctgtgtgtaactgcagagacccatgaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tacaaagcagattgccacgctctttgtgaacctgtgtgtaactgcagagacccatgaggt 471
Query: 181 ctctgcactatggttcctgtggtatgtgaagcagtgtggaggtacaaccagaatcatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctctgcactatggttcctgtggtatgtgaagcagtgtggaggtacaaccagaatcatctc 411
Query: 241 aacaaccaatggaggacaggtacacactctcctaacacaaaactactactacagaaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aacaaccaatggaggacaggtacacactctcctaacacaaaactactactacagaaatgg 351
Query: 301 ttgtcattctgcaatcatgaaattgtggtgcatgaagcaaacttgtggtttgtcatactt 360
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgtctttctgcaatcatgaaatggtggtgcatgaagcaaacttgtggtttgtcatactt 291
Query: 361 cactggggtagcttcaagtagctttcaaaagggaccagttgatgtcaggtatccagaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cactggggtagcttcaagtagctttcaaaagggaccagttgatgtcaggtatccagaggc 231
Query: 421 cagcataattttaagactgggctcctcaga 450
||||||||||||||||||||||||||||||
Sbjct: 230 cagcataattttaagactgggctcctcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
