BAC Information

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BAC

Clone NameMSMg01-428C18
ChromosomeX (Build37)
Map Location 63,409,085 - 63,409,532
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671840
Downstream geneSlitrk2, LOC666824, LOC627734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428C18.T7 (MSMg01no428_c18.b1)MSMg01-428C18.TJ (MSMg01no428_c18.g1)
ACCAG521199AG521200
length753768
length of high quality
(start - end)
447 (70 - 516)364 (72 - 435)
definitionCHROMAT_FILE: MSMg01no428_c18.b1 PHD_FILE: MSMg01no428_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:16 2005CHROMAT_FILE: MSMg01no428_c18.g1 PHD_FILE: MSMg01no428_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATCCTCATGTCACTATACGACTCACTAATGCGAGAGGATCCGCGGAAT
TCTCTAAATTACCAACTCCATAGAAAAGAAATAGATGTGTAGATATATGT
GTATGCGTATGTATATGTTTATGTATATATGTATCTGCTGCATGCACATA
GTTTGTTTAGTGCTGCTTAGATTTATGATAGAATGTCACAATCTTCTATA
ATATAGTATTTTCAAGATTCAATGGAACTACTTTTGCCTAAGTACTTGTT
GCAGGGGGGTTATTCTGTGCACTGTGCATTCAGACGAAGAATTCTGTACC
ACAGATACCTAGTTGTTTTGTAGCCTTGGCATTGTCTTTATTATTAAAGC
ATCTCCTATCTCAATGTTGTGTAAAAGTTGTTCTTTTTCACCTCTGATTC
AGGCATTGTCATTATTATTGGTGAATCTCTATAGGAGGAACAGTCACTGA
GGCAACATCCTCATGGGGCCGAACTGAATCCTGCCAGAGAGCTTAGAGAT
TGGTGACAATGACAGTCAAAAGGTAACTGCCACTTGGAGGACATACTTGC
TTGGTACCAACGGGGGGGGGGACAAGGGTAGGGGGGTCTATGTCATGTAT
TAGTCTAAGATTCTCCCCCTTTTCTTTTCTTTTTCCCCCTCTTTTTCTTT
TTCCTCCCTCCCTCTTTCTTTCATTCTCCTTCCTCCTCCTCCTCTCGTTC
TTCCCTTTTCACCTTTCCCGTTTTTCCCTTTCCTTTTATTTTTCTCCCTC
CCN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGAAGTGGTTGGTGAACTTTATCTTAA
TTGGTTGGCTCTATTTCTAGGGACATTCCAGAACCATTGCTGGTGGGTAG
GGAGTAAAAACTTTTGTTAGGGAAGTCTGAAAACTGTTCCCAACTCATTG
CCCTTGCCTCAGGCCAGGTGGCTGGGCAGCTTCTGATGGTGGGGCAGTTT
CTTAATAGCTGCCTGGGGCTTGGGGCTTTTCCAGTAACTGACTTGCCTGG
ACTTGCCCAGTTCTGTTTTTCAGAGATCTAGGACTCCTCTCCTGAACTGC
CAGCTGTAAAGCCTGTCTTGCAGTCAGCCTGTCTCAGTCCTCTCAAACCT
ACTTATCCTGCTACCTGCCAATGGTATGCTTCTAAAAGACAGTCATAAAT
AATGATGAAAAGACAGGTAAATTGTGTAATTCAGTTGTGGCTCAGATGTT
ACTGCTGCTAGACACTTACAATGAATATACTATGTGAAAGCACATCATTA
CCCATACATCAAATATGACTCCTTGCTCCCTTACCTTTGACCCAAATCCT
TACCCAACCCATGTTTGCGTGTTTTTGTTCGCCGCTTATATTATTTCCCT
CTCCCTTTCCTTTTTTCCCCCCTTTCTTTCCCCTTTTTTTTTTTTTTTTA
TTTTTCCCCCCCTTCTTCATTTTTTCCTTTTTCCTCAATTATTTCTTTTT
TCCTCTCTTCCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_c18.b1 MSMg01no428_c18.b1 CHROMAT_FILE:
MSMg01no428_c18.b1 PHD_FILE: MSMg01no428_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:16 2005
         (447 letters)



>mm_chrX_63408886_63409732
          Length = 847

 Score =  781 bits (404), Expect = 0.0
 Identities = 437/448 (97%), Gaps = 1/448 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagaaaaga-aatagatgtgtagatatatgtgtatgcgtatgtatatgtttatgtatat 59
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 200 atagaaaagacaatagatgtgtagatatatgtgtatgtgtatgtatatgtttatgtatat 259

                                                                       
Query: 60  atgtatctgctgcatgcacatagtttgtttagtgctgcttagatttatgatagaatgtca 119
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 atgtatctgctgcatgcacatagtttgtttagtgctgcttagatgtatgatagaatgtca 319

                                                                       
Query: 120 caatcttctataatatagtattttcaagattcaatggaactacttttgcctaagtacttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caatcttctataatatagtattttcaagattcaatggaactacttttgcctaagtacttg 379

                                                                       
Query: 180 ttgcaggggggttattctgtgcactgtgcattcagacgaagaattctgtaccacagatac 239
           |||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 ttgcagtgaggttattctgtgcactgtgcattcagacgaagaattctgtaccccagatac 439

                                                                       
Query: 240 ctagttgttttgtagccttggcattgtctttattattaaagcatctcctatctcaatgtt 299
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 ctagttgcagtgtagccttggcattgtctttattattaaagcatctcctatctcaatatt 499

                                                                       
Query: 300 gtgtaaaagttgttctttttcacctctgattcaggcattgtcattattattggtgaatct 359
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgtaaaagttgtcctttttcacctctgattcaggcattgtcattattattggtgaatct 559

                                                                       
Query: 360 ctataggaggaacagtcactgaggcaacatcctcatggggccgaactgaatcctgccaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctataggaggaacagtcactgaggcaacatcctcatggggccgaactgaatcctgccaga 619

                                       
Query: 420 gagcttagagattggtgacaatgacagt 447
           ||||||||||||||||||||||||||||
Sbjct: 620 gagcttagagattggtgacaatgacagt 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)