BAC Information

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BAC

Clone NameMSMg01-429A11
ChromosomeX (Build37)
Map Location 16,806,331 - 16,806,837
singlet/doubletsinglet
Overlap geneEfhc2
Upstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063
Downstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429A11.T7 (MSMg01no429_a11.b1)MSMg01-429A11.TJ (MSMg01no429_a11.g1)
ACCAG521855AG521856
length1,497719
length of high quality
(start - end)
---577 (69 - 645)
definitionCHROMAT_FILE: MSMg01no429_a11.b1 PHD_FILE: MSMg01no429_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:23 2005CHROMAT_FILE: MSMg01no429_a11.g1 PHD_FILE: MSMg01no429_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTATAGCCGCCGCCCGCCCTAAATAACCGAAACTCCAACNTAANTTTG
CCCGCAAGAAGAGCATTTCCTGNCNGNNGAAAATNTNCCCTAGCCTTATG
TGNTCTCTCTACTCAAAAGATNCACANNTCCTNNTNTNTNTNNNAAAANN
TAGTAGNTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAG
CTAGCTAGCTAGCTAGNTAGCTAGCTAGCTAGGTAGGTAGNTAGNTAGCT
AGNTAGNCAGNCCCNTNGCCTCACCACTNCNTCGNTAGATAGCTCGTCCT
ATAGAGAGATAGCAGGGTAGAGAGACNAGTAGATCGCTAGCTAGNANGCC
CACTCGCTAGATAGCAAGCTAGCAGACGACTCCCTNGATAGCTAGACCGA
TCACAACTAGCTAGATAGNTACATAACCGCTAGNTCGCTCCTCACTCCGC
AACTCCCTCATAAGTCTATCTCACACTCACACGCCCGTGCCCCAANCANA
TCCCTCCCTACTCTTACATACATCTGAGCCAATATNANTCCATCCTCCCC
TACACACATCACAACCACAAGCCCAACGACACCCTCCAACATCACCATTT
TTTGTTTATGTTACTACNCCCCACCACACACATCCACCAGCCGCCCCCCC
CCCAANAGTGAGACCTCACGCTCCGCACTAGCACCTACTCTTATATAGTN
CTCCCCTCCCCCNACCTCCACACACCGCCACGAGCAGAGGAGTACCGCGC
ACGACTTCAACACTCTNTCCACACTCGCATAANTCACACACTTACACNAC
TCCCCAACACTCCACAACTCCTCCCTACACCATCATAATACTTAGCACCG
CACAAACCAACACAATCGATCTGCACTCATCANCTCCACATCCTACCCCT
CCACGCCCCGCTCCACTCCGCTCGATACACCCTCCACTCTGNTGACACCT
CCGACCCACATNACCACACATCCTCACAGCGATGATCGATATCCAACTAT
CCTACCTCAATCAAACATTCTCACCCTACGCATTCCACTTTCATCCCTAC
ATCACATCCATATNCACACCGACCCCGCACTCCGCGCACACTCACCCTCN
CAACATACACACGTCTCCGTCACAGCACGTCACCACCTACCGCCTACTCA
CACCACCTTGCTCCCTACTCACACACACNACAGACATACACACACACTAC
ANCGATCGACACCACCACANACGTTACCCCACACGANCTCCCCCACAACT
ACCCACACAACCACACCACCCTCTACACATACAACACCCCACATCAACTC
CCCTCATNATACTATCTTCTTCTCTCTTCTCACCACACGCACTCCTCTAT
ATAGACCCTCTCGTCTCCTAGTCAACAACACCTCCCTCACTCGACGCGCA
CACTATGCTCCATCACCCTGCACACGCAACCCAAACTCATATCAATCATC
ACCACACGAACACCACACCACCCACCCCTATACATCCCCCTTCCTCN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGTGTAAATCAGGCTGAACTTGAATTCACT
GTTTTCCTGATTCTTAAATATTGGGATTACAGATGTGTGCTACCACTTTT
ATTTTTTGTTGTTGATATATGACTACACATATCCAAACATATAAGCCCTA
AATGTACTTTGGAATGAGTCTTAACCTGCATCCAAACTAAAATATTGAAC
AGTTACTTCTCCCTTTCTCCTAGATTTTTCTCCTCCAGGATAACCACTTT
TTTTTTATTATATAATTTCTTTATTTACATTTCAAATGTTATCCCCTTTC
CTTGTCTCCCCTCCAAAAATACTTATCCCACTCCCCTCCCCAGCTCACCA
ACCCACTCACTCCTGATTTTTCAGGATAACTACTATTATAATTGTTCTCT
CCATAGGTTGATTTTATCTGATTTTTACTGTTTTCAAAACTTATAATTCA
TTTCCTTTCAGATTAACAAAATTTAAAATGAAATTCCCTTTGATTCTGTT
TTTTAATCTCTCATTAAAAGTTATGTGTGAGATCATTCCCCTATACCTGG
CTCTTCGCCTTAGCAAATTATTCTTTGATGTTGTAGGTATAAAGTCCTCC
GGTGAAGTATATGTATTATTAGTCCTGGAATATCTAAGGTAGAATAACTT
TATATCAATGTAAAAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_a11.g1 MSMg01no429_a11.g1 CHROMAT_FILE:
MSMg01no429_a11.g1 PHD_FILE: MSMg01no429_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:23 2005
         (577 letters)



>mm_chrX_16806331_16807307
          Length = 977

 Score =  965 bits (499), Expect = 0.0
 Identities = 505/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgtaaatcaggctgaacttgaattcactgttttcctgattcttaaatattgggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 actgtgtaaatcaggctgaacttgaattcactgttttcctgattcttaaatattgggatt 448

                                                                       
Query: 61  acagatgtgtgctaccacttttattttttgttgttgatatatgactacacatatccaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acagatgtgtgctaccacttttattttttgttgttgatatatgactacacatatccaaac 388

                                                                       
Query: 121 atataagccctaaatgtactttggaatgagtcttaacctgcatccaaactaaaatattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atataagccctaaatgtactttggaatgagtcttaacctgcatccaaactaaaatattga 328

                                                                       
Query: 181 acagttacttctccctttctcctagatttttctcctccaggataaccactttttttttat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acagttacttctcccttcctcctagatttttctcctccaggataaccactttttttttat 268

                                                                       
Query: 241 tatataatttctttatttacatttcaaatgttatcccctttccttgtctcccctccaaaa 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tagataatttctttatttacatttcaaatgttatcccctttccttgtctcccctccaaaa 208

                                                                       
Query: 301 atacttatcccactcccctccccagctcaccaacccactcactcctgatttttcaggata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atacttatcccactcccctccccagctcaccaacccactcactcctgatttttcaggata 148

                                                                       
Query: 361 actactattataattgttctctccataggttgattttatctgatttttactgttttcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 actactattataattgttctctccataggttgattttatctgatttttactgttttcaaa 88

                                                                       
Query: 421 acttataattcatttcctttcagattaacaaaatttaaaatgaaattccctttgattctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  acttataattcatttcctttcagattaacaaaatttaaaatgaaattccctttgattctg 28

                                      
Query: 481 ttttttaatctctcattaaaagttatg 507
           |||||||||||||||||||||||||||
Sbjct: 27  ttttttaatctctcattaaaagttatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)