Query= MSMg01no429_h15.b1 MSMg01no429_h15.b1 CHROMAT_FILE:
MSMg01no429_h15.b1 PHD_FILE: MSMg01no429_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:59 2005
(486 letters)
>mm_chrY_1655640_1656520
Length = 881
Score = 412 bits (213), Expect = e-119
Identities = 421/493 (85%), Gaps = 23/493 (4%)
Strand = Plus / Plus
Query: 1 aaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttgggtgctttct 59
||||| ||||||| ||||||| |||| || |||||||||||||| | | ||||| ||
Sbjct: 201 aaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tcagtgctctc- 258
Query: 60 a-tttcaggctcacaatgatcaatggtatatacttt-ctaggttgtataactgcacttca 117
| ||||||||||| ||| |||||| |||| ||| ||| ||||||||||||||| ||
Sbjct: 259 agcttcaggctcac---gattaatggtttata-tttgctaccttgtataactgcactaca 314
Query: 118 -tttctctaccaggaacctttcctcagattctgtcctcatcaagaatcccat-ctaatac 175
||| |||||| |||| ||| |||||||| ||||||||| |||| || ||| | || ||
Sbjct: 315 gttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--catgc-aacac 370
Query: 176 catcagacacttctatgc-atcagagggaacaaggtctagctgtgtgccttgcaggttgg 234
||||||| | |||||||| | |||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 371 catcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatgcagtttgg 429
Query: 235 gtagagcactgtcaatatcccttctcctccagcaaaccctctcaag-gctcacaacggtt 293
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 430 ttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctcacaaagttt 489
Query: 294 gtcttccagaata-aaatctgattgcctaagagaaggagcaaatcatctctgcttgctct 352
|||||||| | | |||||||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 490 gtcttcca--agacaaatctgagtgcctaaaagaaggagcaaagcatctccacttgctcc 547
Query: 353 aatgtctaaatgccattacagattaagaaaaaacctag-agcttccctaagattctcagt 411
||| ||||||||||||| ||||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 548 aatatctaaatgccattgcagattaagaaaatccctagcag-ttccccaagattctcagt 606
Query: 412 ccgggagcatttggacaatccattactttcatagggtccaaaattgtttgaattctacag 471
|| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct: 607 ccaggagcatttgggcaatctattactttcatagggtccaaacttgtttgaattctgcag 666
Query: 472 accaatgaattgt 484
||||||| |||||
Sbjct: 667 accaatgcattgt 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 881
Length adjustment: 10
Effective length of query: 476
Effective length of database: 871
Effective search space: 414596
Effective search space used: 414596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_h15.g1 MSMg01no429_h15.g1 CHROMAT_FILE:
MSMg01no429_h15.g1 PHD_FILE: MSMg01no429_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:59 2005
(445 letters)
>mm_chrX_53358152_53358990
Length = 839
Score = 308 bits (159), Expect = 6e-88
Identities = 364/439 (82%), Gaps = 19/439 (4%)
Strand = Plus / Minus
Query: 1 ctactcaaagtcattggagacaacagcaaatctgttttgtccgaatggagaatggatgag 60
|||| ||||||| ||||||||||||| | || | ||||| | |||||||||||| |||
Sbjct: 466 ctacccaaagtctttggagacaacagggattccg-tttgttctaatggagaatgggggag 408
Query: 61 gatttgtgctccattaaaaaggtcaataaattgactaatttgattcctgcctgtatattt 120
||| ||||||||||||||||||| || ||| |||| |||||| |||| |||| |||||
Sbjct: 407 tattagtgctccattaaaaaggtccttacattcactagtttgatgcctgtctgtctattt 348
Query: 121 gtgtgtgctttgtacttttttctgctttgtgttgtgctctgtgttcttgattattaactc 180
| ||||||| ||||||||| |||||| ||||||||| |||||||| ||| || ||||||
Sbjct: 347 gagtgtgctatgtacttttgtctgctgtgtgttgtgttctgtgttattggctactaactc 288
Query: 181 tagggtccttactatacttgcaaaatgaaatatttctcagttggaaaagctctcattttt 240
|| ||||||||| ||||||||||||||||| ||||||| ||||| || |||| ||
Sbjct: 287 tacggtccttaccatacttgcaaaatgaaa-----ctcagtttgaaaatctttcatattc 233
Query: 241 ttcctctgtatacaatatgattcttt-aaaaaata--agtttttgtttcctttgtactaa 297
||||||||||||||||||||||||| |||||||| ||||| || |||||||||
Sbjct: 232 gtcctctgtatacaatatgattctttaaaaaaatatcagtttatgagacctttgtac--- 176
Query: 298 tagtaagatcaaaatttctgggaagacacttttcattgaaaatacagt-ttttcattcaa 356
||| ||| | |||| | |||||| |||||| |||||||||||| | ||||||||||
Sbjct: 175 ---taacatctacattt-ttggaagatacttttaattgaaaataca-tcttttcattcag 121
Query: 357 tagattcagattactgtccccccaattccttctacaacctctccacttctcgacccatcc 416
|| |||| |||||| |||||||||| |||||||| | |||||||||||||| ||||| ||
Sbjct: 120 tacattctgattacagtccccccaactccttctatatcctctccacttctctacccaccc 61
Query: 417 aaattcacactttttcttt 435
|||||||||| ||||||||
Sbjct: 60 aaattcacac-ttttcttt 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 839
Length adjustment: 10
Effective length of query: 435
Effective length of database: 829
Effective search space: 360615
Effective search space used: 360615
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
