GCGGCCGCTAAACGACTCCTAATTCCAGAAATCCGCGGAATTCCTCATGT
TTTGGTACTCTGCTGTCAATCTAATCTGGGAGTTCCTTGACAGAGATGAC
ACCTACAGAATAATACCTATCCTCAAAGAATCTATCTCAAGGCTGTTCTT
ACAGAAGGAGCAGTAGTCCAAAAGCTACAGCACAGTAACAAATGGCTTCT
TTGAAATATAGGCTTGGAATTATCAATAGTGTCACCTCTGTCATGGTCCA
CAACATAAAGTAAGTCAGGGGTTGGAGCAAATTCATATTCCTAGTGGAAG
AAAGTCTATAGTTGTATTGGAGAGTATGAATAGAGAAAGAAAAAACAATT
GAATTTTGACTCTTAATATTTGCCAAATTAAAATAAAATGGTTATCAAAA
TGGACAAAAAGGAGAAATTAAAGATGTTTCATGTATTTATTAATTATAAT
TTAACAATGTAGTATTCATTATTATTTAGTATAAACTCTTACCAAAATTG
AGCTTAATTTGGCTTAGGATTCCAGAAGATTAGAGGTCACAATGACTGTT
ATACAATGGAATTATGCAACAACCCTGGTGTGAGGAATAGAACCCCAAGA
GCTCACAACTTGAACCATAAGCACAATTCACAATTTGAAACTGGGATTAG
GCAAGGATTTTTACTCTAAAACACTGACATGAAATGACATACTTCTTTCC
GTAAGACCATATACCCTACAGCTCACCAAACACCACCAACAA

ATGTGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATATATGATTTTTTTAAATTTATAAACAC
AGGGAAAAATCAAATTCAGGATTATTTAGGTTGCATTTGGAATCTAGTCC
TTTGAGAAATCTAGTTCTTGGTGGTTTAAGAAAGAAGAGTGAATCTAGAT
ATGGTGGTTCATGAATATATCCTCAACATTAAGGATGATGAGGCAGGAGG
ATGGCCATGACTTTAAAGTCAGCTTGGGGTATATGGCGAGTTCCAACCTA
GTCTGAATGCTATAATGAGACAAAATAAAGTTGGAGAATTGAGTTTTTGC
TGACTGCCAGTTTGAAGTGCCATTGTTGCTTGAGGTCTCTGAACTCATGC
ACGTAAATTTCTATTTTTCTGTGTCAGAAATTGAACATTATATTGAACAT
GCTTAGAGTCTCTCCTGTTTCTCAGAAAGAAAACTTTTCTCTGTTTAGAA
GGAGTCATTCATGTACACTGAACCCATGCAGACAACCCCATACTTTGTAT
CTATTTTTAAGGAAGGACTGGAATTTTATTAAAATTTGCCACACAATTTA
ATTTGACAAGGGATTTTCCGTTCTAGGGAGCTATTACATTGTTGGGGTGA
AACTTGGACCCCCCACAATTTGAAGGAAAGGGTTTTTTTTATTCATAGCC
TAAAACCAGCCGCGCTGGAAACAAGGAATACCTGTTGGACAAACTTGAAA
AAAGCGCTTTTAAAA

Query= MSMg01no429_m13.b1 MSMg01no429_m13.b1 CHROMAT_FILE:
MSMg01no429_m13.b1 PHD_FILE: MSMg01no429_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:22 2005
         (588 letters)



>mm_chrX_86440734_86441721
          Length = 988

 Score = 1089 bits (563), Expect = 0.0
 Identities = 581/587 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctgctgtcaatctaatctgggagttccttgacagagatgacacctacagaataatacct 61
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 202 tctgctgtcaatctaatctgggagttccttgactgagatgacacctacagaataatacct 261

                                                                       
Query: 62  atcctcaaagaatctatctcaaggctgttcttacagaaggagcagtagtccaaaagctac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atcctcaaagaatctatctcaaggctgttcttacagaaggagcagtagtccaaaagctac 321

                                                                       
Query: 122 agcacagtaacaaatggcttctttgaaatataggcttggaattatcaatagtgtcacctc 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 322 agcacagtaacaaatggcttctttgaaatataggcttggaattatcaatagtgttacctc 381

                                                                       
Query: 182 tgtcatggtccacaacataaagtaagtcaggggttggagcaaattcatattcctagtgga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtcatggtccacaacataaagtaagtcaggggttggagcaaattcatattcctagtgga 441

                                                                       
Query: 242 agaaagtctatagttgtattggagagtatgaatagagaaagaaaaaacaattgaattttg 301
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agaaagtctaaagttgtattggagagtatgaatagagaaagaaaaaacaattgaattttg 501

                                                                       
Query: 302 actcttaatatttgccaaattaaaataaaatggttatcaaaatggacaaaaaggagaaat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 actcttaatatttgccaaattaaaataaaatggttatcaaaatggacaaaaaggagaaat 561

                                                                       
Query: 362 taaagatgtttcatgtatttattaattataatttaacaatgtagtattcattattattta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taaagatgtttcatgtatttattaattataatttaacaatgtagtattcattattattta 621

                                                                       
Query: 422 gtataaactcttaccaaaattgagcttaatttggcttaggattccagaagattagaggtc 481
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 622 gtataaactcttaccaaaattgagcttattttggcttaggattccagaagattagaggtc 681

                                                                       
Query: 482 acaatgactgttatacaatggaattatgcaacaaccctggtgtgaggaatagaaccccaa 541
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 682 acaatgactgttatacaatggaattatgcaacaatcctggtgtgaggaatagaaccccaa 741

                                                          
Query: 542 gagctcacaacttgaaccataagcacaattcacaatttgaaactggg 588
           |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 742 gagctcacaacttgaaccataagcacaattcacaatgtgaaactggg 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_m13.g1 MSMg01no429_m13.g1 CHROMAT_FILE:
MSMg01no429_m13.g1 PHD_FILE: MSMg01no429_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:22 2005
         (404 letters)



>mm_chrX_86577213_86578016
          Length = 804

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 52  ttatttaggttgcatttggaatctagtcctttgagaaatctagttcttggtggtttaaga 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttatttaggttgcatttggaatctagtcctttgagaaatctagttcttggtggtttaaga 745

                                                                       
Query: 112 aagaagagtgaatctagatatggtggttcatgaatatatcctcaacattaaggatgatga 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagaagagtgaatctagatatggtggttcatgaatatatcctcaacattaaggatgatga 685

                                                                       
Query: 172 ggcaggaggatggccatgactttaaagtcagcttggggtatatggcgagttccaacctag 231
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 ggcaggaggatggccatgactttaaagtcagcttggggtaaatggcgagttccaacctag 625

                                                                       
Query: 232 tctgaatgctataatgagacaaaataaagttggagaattgagtttttgctgactgccagt 291
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctgaatgctataacgagacaaaataaagttggagaattgagtttttgctgactgccagt 565

                                                                       
Query: 292 ttgaagtgccattgttgcttgaggtctctgaactcatgcacgtaaatttctatttttctg 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgaagtgccattgttgcttgaggtctctgaactcatgcacgtaaatttctatttttctg 505

                                                                
Query: 352 tgtcagaaattgaacattatattgaacatgcttagagtctctcctgtttctca 404
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtcagaaattgaacattatattgaacatgcttagagtctctcctgtttctca 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)