Query= MSMg01no434_k09.b1 MSMg01no434_k09.b1 CHROMAT_FILE:
MSMg01no434_k09.b1 PHD_FILE: MSMg01no434_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:07 2005
(476 letters)
>mm_chrX_135248109_135248983
Length = 875
Score = 692 bits (358), Expect = 0.0
Identities = 390/404 (96%), Gaps = 8/404 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagaaactatttcc---tttttgctcttctacctcagtggtcattgtaccattt 60
||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggaattcagaaacta----catatttttgctcttctacctcagtggtcattgtaccattt 345
Query: 61 aatcagtctactcgttttaacattggggtaaattctacatttaacttataaaataaaaat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 344 aatcagtctactcgttttaacattggggtaacttctacatttaacttataaaataaaaat 285
Query: 121 tacataagtaaaataaatagtgcttacttataatgaggaagaaatcactatcttaaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tacataagtaaaataaatagtgcttacttataatgaggaagaaatcactatcttaaattt 225
Query: 181 ttgttaaaagagaagcattgcttt-aaaaatatttttatgtatgtgagcatactgcaact 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 224 ttgttaaaagagaagcattgctttaaaaaatatttttatgtatgtgagcatactgcaact 165
Query: 240 gtcttagacatacaagacagggacatcagatcccattccatatttttatgagctatcatg 299
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 164 gtcttagacatacaagacagggacatcagatcccattccagatagttatgagctatcatg 105
Query: 300 tagttgctgggaattgaactcaggacatctggaagagcagtcagtgctctaaaatagctg 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tagttgctgggaattgagctcaggacatctggaagagcagtcagtgctctaaaatagctg 45
Query: 360 agccatctctccagccccactatcttatatctttaagtatatac 403
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 44 agccatctctccagccccactatcttaaatctttaagtatatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space: 403090
Effective search space used: 403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_k09.g1 MSMg01no434_k09.g1 CHROMAT_FILE:
MSMg01no434_k09.g1 PHD_FILE: MSMg01no434_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:07 2005
(473 letters)
>mm_chrX_135161088_135161960
Length = 873
Score = 868 bits (449), Expect = 0.0
Identities = 467/473 (98%)
Strand = Plus / Plus
Query: 1 cacttagatttgaggtttttgaactatgaaaaacataagcattttctacactctgacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttagatttgaggtttttgaactatgaaaaacataagcattttctacactctgacata 260
Query: 61 aaaacagggagaaagtcacacatattcacacacaatccatatacctattcaaatatatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacagggagaaagtcacacatattcacacacaatccatatacctattcaaatatatct 320
Query: 121 agttccacccaaaatgcagaataacttactttaatacaagcaataaggaagaaggccacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttccacccaaaatgcagaataacttactttaatacaagcaataaggaagaaggccacc 380
Query: 181 acagaatttttctagaaaaatatagtagaataagaggacttctagttaaatagaacaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaatttttctagaaaaatatagtagaataagaggacttctagttaaatagaacaata 440
Query: 241 tcttattcattttttagatctatgattaatgacccaacatttctacttaagagctcattt 300
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttattcacagtagagatctatgattaatgacccaacatttctacttaagagctcattt 500
Query: 301 atatatgaatcttcaattccattgtgatggattatgtcattctaaattacttggtgtctt 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 atatatgaatcttcaattccattgtgatggattatgtcattctgaattacttggtgtctt 560
Query: 361 ttaccataccattatttggggatgagtctggaagactgataaataaaatctcatttatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaccataccattatttggggatgagtctggaagactgataaataaaatctcatttatca 620
Query: 421 tttgtcatggatttttcttagcttgaacagttttacagattttattaaatttc 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtcatggatttttcttagcttgaacagttttacagattttattaaatttc 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
