BAC Information

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BAC

Clone NameMSMg01-434N14
ChromosomeX (Build37)
Map Location 9,309,949 - 9,310,192
singlet/doubletsinglet
Overlap genenone
Upstream geneSsx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3
Downstream gene1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434N14.T7 (MSMg01no434_n14.b1)MSMg01-434N14.TJ (MSMg01no434_n14.g1)
ACCAG526293AG526294
length750762
length of high quality
(start - end)
251 (63 - 313)248 (67 - 314)
definitionCHROMAT_FILE: MSMg01no434_n14.b1 PHD_FILE: MSMg01no434_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:23 2005CHROMAT_FILE: MSMg01no434_n14.g1 PHD_FILE: MSMg01no434_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAG
ACTATCCCCACCTAAATAGTGAGACCCTGTCTATTAAAAAGAAAGAAAAC
CAATGAGTGGTAGTGGTCTTTAGCTGATTCAGCTGAAAGCAATTAGGGGA
CTTCCTAACTAGGGGTATGTGCAGAGAGCTGTTACCCGTTCTTCTAGTGA
ACTTTCAAGCTCGAGGGTATTTAAACTCTTAGTGCATATTATTGTGTCTC
ATATTCATATATACACATAGATGTATATGAGACACAATAAATTATATTAT
ATGTTCTACAATATATTATTTCTATAACATATTATATATTACTATTTATA
TTATTATATAATATATTATGTATCTTATTCTATTATATATATACATATCA
GACTGAATTCTGGATAAAGCAGACTTCCTGGGAGGAAGTCTTTTCCTGGA
AGTACTCTCCCTGTGATATACATAGCATAATCATTATCCGACAGAATATT
CCCTTCTGCGAGCATAGAAGCATCACCGCTTCTCTATGCCCTACCTTTAG
CTTTCTTTTATGTATTTCCTAAGGTATTGCGGTGTTTTTTCTCACCTCTA
AGATTCTTTTACTCTTTTCAATGCTCTCATTTGCATCCTTTGTCTTAGTC
TGGTCCTAATCTCGTTCCATTTTCTCCTGATCCCCAATTTACTATCTCCC
CTCAGTCTTCTCTCCTATTCATTTTTTTCCCTTTTCTCTTCCCTCTCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCAGAGGAATACCGAATGGCTGAGAAGCACC
TGAAAAAAATGTTCAGCATCATTAATCATCAGGGAAATGCAAATCAAAAC
AGCCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATAAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTCGTGGGATTGCAAGCTTGTACAACCACTCTGGAGATCAGTCTG
TTGGTTCCTCAGAAAATTGTACATAGTACTACCATAGGATCCGAAATACC
TCTCCTGGGCATGTATCCAGAATATGTTACAACTAGTAAGAAAGATACAT
GCTCCACTATGTTCATAGCAGCATTATTTATAATACCCAGAAGTTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACAT
TTACATAATGGAGTTCTACTCAGCTATTATAAAGAAAAAAATTTATGAAA
TTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCCTGGTGAGGTAAC
CCCTTCCCCTAAGGAACTTCTCCAATATGGTATTCCCTGATAAGGGGGAT
ATTAACCCTCCTATAGGTTAAAAAACCCACTATACAACAATCCATATTTC
TATAAAAACCGGGAGAATTCTCCGAATAATCCTATTACTCATTATGTCTT
CACTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_n14.b1 MSMg01no434_n14.b1 CHROMAT_FILE:
MSMg01no434_n14.b1 PHD_FILE: MSMg01no434_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:23 2005
         (251 letters)



>mm_chrX_9309765_9310415
          Length = 651

 Score =  431 bits (223), Expect = e-125
 Identities = 242/251 (96%), Gaps = 7/251 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatagtgagaccctgtctattaaaaagaaagaaaaccaatgagtggtagtggtcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taaatagtgagaccctgtctattaaaaagaaagaaaaccaatgagtggtagtggtcttta 369

                                                                       
Query: 61  gctgattcagctgaaagcaattaggggacttcctaactaggggtatgtgcagagagctgt 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gttgattcagctgaaagcaattaggggacttcctaactaggggtatgtgcagagagctgt 309

                                                                       
Query: 121 tacccgttcttctagtgaactttcaagctcgagggtatttaaactcttagtgcatattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tacccgttcttctagtgaactttcaagctcgagggtatttaaactcttagtgcatattat 249

                                                                       
Query: 181 tgtgtctcatattcatatatacacatagatgtatatgagacacaataaattatattatat 240
           |||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||  
Sbjct: 248 tgtgtctcgtattcatatatacacatagatgtatatgagacacaataa--tatat-at-- 194

                      
Query: 241 gttctacaata 251
             |||||||||
Sbjct: 193 --tctacaata 185


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)