BAC Information

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BAC

Clone NameMSMg01-435G05
ChromosomeX (Build37)
Map Location 111,643,668 - 111,643,995
singlet/doubletsinglet
Overlap geneKlhl4
Upstream geneDach2, LOC237016, EG664945, EG634881, LOC100039201
Downstream geneGm1866, EG546361, EG237009, 4930524E20Rik, LOC237008, EG664969, EG546362, LOC100039255, LOC623913, LOC546363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435G05.T7 (MSMg01no435_g05.b1)MSMg01-435G05.TJ (MSMg01no435_g05.g1)
ACCAG526704AG526705
length840782
length of high quality
(start - end)
185 (47 - 231)328 (78 - 405)
definitionCHROMAT_FILE: MSMg01no435_g05.b1 PHD_FILE: MSMg01no435_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:06 2005CHROMAT_FILE: MSMg01no435_g05.g1 PHD_FILE: MSMg01no435_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTTCAAGACTTTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGCTTATATAATGGATTACATTGAAGGATTTTCATATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGTATGATTGCTT
TAATGTGTTCTTGGACTCGGTTAGCGTGAATTTTAATGAGTATTTTTGCA
TCTATATTCTTAACATCCTTTTTTCTGATTTCCTCCATCTTCCTTGCATC
TCTCTGAGCTTCAAATCTTTATAACACATCCTTCCTTCTCAATTCATCTC
CTTTTCCCCTTCTTTCCTTTCCTCCCCCTCATTTTTCTTACCTCCCTCTT
CTTTTCTTCTTTTTACCTCTTTTATTATTTTTCCCTTTATTTCTCTTCCC
CCATCTATCCCCCCTATTTTTCCTCTCTCCCTTCCCTCCCCCTTTTCTCC
TTTTACCCCTCCCCCTTTTACACTTCCCCTTTTCCTTTCCCCACCATTTT
CTTTTCTTTTCCCTTTTCTTTCCCTCTTTCTTTTTCCTATTATTTTTCTT
TCCCCTTTTACCACCCACTTATTCCTCCCTTTCTTTCTTTCCCCTTCCCT
CTTATTCTTCCCCCTATACTCCTTTCCCCCCCTTTCCCCCCCCTTCCCTT
TTTTCTTTCTTATTCCCCTCTTCTTTTTCTACCCACCTTACTCCCTCCTT
CCCCTTTTTTTCCCTTTTCTCTTTCTTCCCTCTTTCCCCG
TCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTGCTTCCAGCTAATGAAAT
ATCAAAACTTCTGTGTAGTGATGACATTAATGTGCCTGATGAAGAAACAA
TTTTCCATGCTCTTATGCAGTGGGTAGGTCATGATGCTCAGGCTAGGCAA
CGAGATCTGGCAAAGCTGCTTTCTTACATTAGACTGCCATTACTCTCACC
ACAGGTATGGAACTTTATCATGATAATGTAAATTAGATTTCTAAATGACC
AGTAGGCAGCAAACCAATAATTATTTGACATTTTTTTCAAAGACTATATA
ATAATGTTGTATACAGAATTCACTTCATAGAAAACCAGTCTTCAATTACG
GGTATTAATAATGGAGAACAAGACCTGCAGCTTATTAGAGTATCCTACAG
ATGATCCCCCAAATTGTCATATCCTTTATCTCCCGCTTCCCTTTTTTATC
CAATTTTTTCATAATTCGCCAATTAATCTGTTTACCCTTCTCTCTTTCAT
TCCTACTCCCCTTCTTCCCTTTATTGCCCCCCTTTCTTCTTTTCTTTTAT
TCCTGTTAAACCTTTTTCCACCCCTCCCAATCTTGTTTTTTTTCATTTCC
CTTTCCCCCTTTTTCTCTCTCTCATTTTTTCTCTCCTTTTCTCTCCTATA
TTCCCCCTACTTTCCCTCTCTTTTTTTTTTTTTCCTCCCCCCCCCTTTTC
TTTTTTCCTCCCCTTCCCTCCTTTTTCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_g05.g1 MSMg01no435_g05.g1 CHROMAT_FILE:
MSMg01no435_g05.g1 PHD_FILE: MSMg01no435_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:06 2005
         (328 letters)



>mm_chrX_111643468_111644195
          Length = 728

 Score =  634 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctgcttccagctaatgaaatatcaaaacttctgtgtagtgatgacattaatgtgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctgcttccagctaatgaaatatcaaaacttctgtgtagtgatgacattaatgtgcct 260

                                                                       
Query: 61  gatgaagaaacaattttccatgctcttatgcagtgggtaggtcatgatgctcaggctagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgaagaaacaattttccatgctcttatgcagtgggtaggtcatgatgctcaggctagg 320

                                                                       
Query: 121 caacgagatctggcaaagctgctttcttacattagactgccattactctcaccacaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacgagatctggcaaagctgctttcttacattagactgccattactctcaccacaggta 380

                                                                       
Query: 181 tggaactttatcatgataatgtaaattagatttctaaatgaccagtaggcagcaaaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaactttatcatgataatgtaaattagatttctaaatgaccagtaggcagcaaaccaa 440

                                                                       
Query: 241 taattatttgacatttttttcaaagactatataataatgttgtatacagaattcacttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taattatttgacatttttttcaaagactatataataatgttgtatacagaattcacttca 500

                                       
Query: 301 tagaaaaccagtcttcaattacgggtat 328
           ||||||||||||||||||||||||||||
Sbjct: 501 tagaaaaccagtcttcaattacgggtat 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)