BAC Information

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BAC

Clone NameMSMg01-435H21
ChromosomeX (Build37)
Map Location 77,180,443 - 77,180,892
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629116, LOC636082, EG667736, LOC100041373, EG636104, 2410003J06Rik, LOC667749, LOC211702, LOC667755
Downstream geneLOC211705, LOC654474, LOC629153, LOC546338, LOC100042229, LOC667776, EG629182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435H21.T7 (MSMg01no435_h21.b1)MSMg01-435H21.TJ (MSMg01no435_h21.g1)
ACCAG526784AG526785
length802796
length of high quality
(start - end)		453 (43 - 495)399 (72 - 470)
definitionCHROMAT_FILE: MSMg01no435_h21.b1 PHD_FILE: MSMg01no435_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:15 2005CHROMAT_FILE: MSMg01no435_h21.g1 PHD_FILE: MSMg01no435_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTTCAGTTTTCTATGATTTAATTATGCAAAAAGGTCAAAGTTTTTCA
AGGAATTTCTTTAGGCATGATAATTTTGAGCACAAGTTATTATGAAAACT
TAAACACATAATAGAGTTCAAATTATAAAAGCAGCTCATTTTTTATTTTT
AATGATATTGCTGTCAAGAATAAAACTACATATAATTTATTTGCATCAAA
TTTGAACTGTCTTAAATTGAGGACATGAGATCACCTAAATCATTATTCAT
GATGACTGACATTTCTCTTATTCTCTTCTTTGTCTTTCCTGTGAACAATA
TAATAGACAAATTGCTGTGCTCAGCATACATAAATTATTTTAATTTTATT
TTTGTAATGGTGTGGAAATCCTTCTTACTTTAATTTACTGAAACACAAAT
CTACACCTCTGAACACACATTTACATAACTACAATGAAAATTAAGTTTTC
ACATACACTAATAACAGATTTGTTGTGCCCATAGTTGATAAAATATCCGT
TTAGATAAAAATAAGCATTGCTTTCTTTTCCTTGGGTAAGAAAAAAAAAT
CCCATTGCCATACCTCCGAAAAGCTTTATTCCCAAACTGCTTCAAGGGGA
GAAATTAATCCCGTACCCCCTTTTTTTTTAAACCTAAGTCCGAAACCCCC
TTTCGATTGTAAATTGTAAAAGGGGTTTTTACCCCCCAAAAACGGGAAGA
AAATTAAAATTTTAATTGGGGGGGGAATTTTTTTAGTAAAATTTATTTTT
TN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCTGACAAATGGAGATTCTCCACAGATA
CTTAAAAGTTACACTCTTACAAGAATTTATCAGGGCCTAGGAAATAGGGG
ACTTATGGTATTGCATTATTCATGAGAAGGAATGCTAGAGCAGAACCCCT
AGTGGTGGGCATAACAATAGACTAGCTTTACACCTGGCTCCCTTCTCTGT
GGCAGTGGCCTGGCTCCTGCCTTCTTTTGATGTATATATTCCTTTTGTAT
TGTGTCACTGTAACTTGGTGGGCGTATCTCGCCTGGTTTCTTGTTATTCT
TCTGTATAAAAAGTTTGATGCTCTACTTGACAAATTACATTCAGATTCTA
CACAATCTCCTGTGTGCATCTGTCTGTCATTTTCACTGACTCCTTGCCCA
TCTGCACCTAGAGACCCATCTAATGCAGACAAGGGACCCAAGAGGGTCTG
CGGCAGGAACTGACCTCAAATCCCTGATTTGTGAGGAAGCCATTTTATAA
AATATACCTCGCCCCCTATGAAGGCATGGGTGGCACAACGAAACACCCCC
CCTTATTCCCCTCCAATATAAGAATTCCCACAACAGGCGGGGTGCCGGTA
ATCCTCTAACCCCAAAATGTCCCCCCATGGAAAACCCCTCAACTCCTATT
GTTTTTTGCTGGCCCCCCACTTAAAAAAAACAACGGCATTCCCATCCTTC
TCCTCTTTTGAAACCCCTACACTTTTTTTTTTTCTCCCCTCGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_h21.b1 MSMg01no435_h21.b1 CHROMAT_FILE:
MSMg01no435_h21.b1 PHD_FILE: MSMg01no435_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:15 2005
         (453 letters)



>mm_chrX_77180240_77181092
          Length = 853

 Score =  862 bits (446), Expect = 0.0
 Identities = 449/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctttcagttttctatgatttaattatgcaaaaaggtcaaagtttttcaaggaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctttcagttttctatgatttaattatgcaaaaaggtcaaagtttttcaaggaa 263

                                                                       
Query: 64  tttctttaggcatgataattttgagcacaagttattatgaaaacttaaacacataataga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttctttaggcatgataattttgagcacaagttattatgaaaacttaaacacataataga 323

                                                                       
Query: 124 gttcaaattataaaagcagctcattttttatttttaatgatattgctgtcaagaataaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttcaaattataaaagcagctcattttttatttttaatgatattgctgtcaagaataaaa 383

                                                                       
Query: 184 ctacatataatttatttgcatcaaatttgaactgtcttaaattgaggacatgagatcacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctacatataatttatttgcatcaaatttgaactgtcttaaattgaggacatgagatcacc 443

                                                                       
Query: 244 taaatcattattcatgatgactgacatttctcttattctcttctttgtctttcctgtgaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaatcattattcatgatgactgacatttctcttattctcttctttgtctttcctgtgaa 503

                                                                       
Query: 304 caatataatagacaaattgctgtgctcagcatacataaattattttaattttatttttgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caatataatagacaaattgctgtgctcagcatacataaattattttaattttatttttgt 563

                                                                       
Query: 364 aatggtgtggaaatccttcttactttaatttactgaaacacaaatctacacctctgaaca 423
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatggtgtggaaatcctttttactttaatttactgaaacacaaatctacacctctgaaca 623

                                         
Query: 424 cacatttacataactacaatgaaaattaag 453
           ||||||||||||||||||||||||||||||
Sbjct: 624 cacatttacataactacaatgaaaattaag 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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