BAC Information

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BAC

Clone NameMSMg01-436H14
ChromosomeX (Build37)
Map Location 134,699,158 - 134,699,317
singlet/doubletsinglet
Overlap geneIl1rapl2
Upstream geneEG666303
Downstream gene1700025D03Rik, Nrk, Serpina7, 4930513O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436H14.T7 (MSMg01no436_h14.b1)MSMg01-436H14.TJ (MSMg01no436_h14.g1)
ACCAG527532AG527533
length849751
length of high quality
(start - end)
163 (44 - 206)442 (75 - 516)
definitionCHROMAT_FILE: MSMg01no436_h14.b1 PHD_FILE: MSMg01no436_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:33 2005CHROMAT_FILE: MSMg01no436_h14.g1 PHD_FILE: MSMg01no436_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGTCCGCGGA
ATTCTGTGAGGTCCATGGGAAGAGAATATATAAATGTGTTTTCAAGAAGA
CATACCAAGTTTATGGTTGAGGAAGTACTGATTGGAAATAGAAATAGTGA
TAGAAATAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGATACACCCCCTCCTCCTTTTTCCCTCTCCTTTTTTTTCCTTTCTTCTT
TTTTCCCTTTCCTTTTCTCCTCCTTTTTTCCTTTACTTTTCTTTCCCTTC
CTTCCCTTGTTTTTTTTTTTTTTTTCCCCTTTATCCCCCCTTTCCTTCTT
CTTCCTTTTATTTCTCTCCTTTTTTCTCTTCCCGCGCCGTTTTTTCTCTT
TTCTTTTTCTTGTTTTGTGCCCCCCTTTTCCATTATTTCTTCTTCTTTTC
TCTCTTTTTTCCTCCTCTTTCTCCCCCCCCTTTTTTTTCTCCTTCTTCTT
TTCTCCTCTTCTTCTTTTTCCTCCTCTCCTTTTTTTTTTCTCCTTCTTTT
CTTCCTCTTTTTTTCTCTCTTTCCTCCCTTTTCCTCCCATTCTTTTTTTA
CACTTCCTCTTTATTCTCTTCTCCCTCTTCTTTTTTTTTCTCCCCCCTTC
TTTTTTTTCTTTCTCTCCCTTCTTCTCATCTTTCTTTCACTCCTTTTTTT
CTCCCCCCCCCTCTTATTTCTTCCTTCTCCTTTTCCATTATCTCTTTTAT
CATTTGTTTTTTCTTCTATCCTCTCATATTTCCCCTTTTTTTTCATACCT
TTTCCCCCCTCCCCTTTCCTATCCTTCTTTCTCTCTCCTCCTTTTTTTT
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTTTAGCTCTATACCTCATTTTT
TAAAAATTGTTGAATTTGTTTTGGTGCAGTCTAGCTTATTGAGTTCTTTA
TGTATTTTTGGATAAGAGCCTCTGTTGGATAAAGGGTTAGTGAAGATCTT
TTCCCAGTCTGTAGACTGTTGACAGTGTCCTTTTCCTTACAGAACCTTTT
CAGATTCAAGAGGTGCCATTCATCAACTTTTGATCTTAGAGCCTGAGCCC
TTGGTGTTCTGTTCAGGAAACTTTCTCCTACATCCATGTGTTCAACGCTA
TTTCCCACTTTATCCTCTATTAGACTTACTGTATCCTGTTTTATGTTGAG
GTCCTTGATCCACTTGGACTTCAGTTTTATTCAGATGATAAACATGGACC
AACCATGCAGACCACCAGGTAGAACAGCACCATTTGTTGAAGATGCTTTC
TTTTTATCACTGTATGGTTTTGACTTCTTTCCTCAGCGCCCGTATGAATG
CGGGTTTATTCCCGGGTCTTCTTGTTTCTTTTTTTTTTTTCTTTTCGTTC
TCGCTACCTTAATCTTTTCCCCTCTCTTACTATTTATTTTATTTTTTTTT
TCCCTTTCTATCTCTCCTCTCTCTCCCCCTCCTTTTTTGTTTTTTTCCCC
CTTTATTTGTTTTTTCTTTCTTTTTTCTTCTCCTCTTTTTTTTTTCTCCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_h14.b1 MSMg01no436_h14.b1 CHROMAT_FILE:
MSMg01no436_h14.b1 PHD_FILE: MSMg01no436_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:33 2005
         (163 letters)



>mm_chrX_134698953_134699516
          Length = 564

 Score =  265 bits (137), Expect = 1e-75
 Identities = 154/163 (94%), Gaps = 9/163 (5%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctgtgaggtcc---atgggaagagaatatataaatgtgttttcaagaagacatac 62
           ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgtgaggt--tttatgggaagagaatatataaatgtgttttcaagaagacatac 263

                                                                       
Query: 63  caagtttatggttgaggaagtactgattggaaatagaaatagtgatagaaataatagata 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagtttatggttgaggaagtactgattggaaatagaaatagtgatagaaataatagata 323

                                                      
Query: 123 gatagatagatagatagat---agatagatagatagatagata 162
           |||||||||||||||||||   |||||||| ||||||||||||
Sbjct: 324 gatagatagatagatagatgttagatagat-gatagatagata 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 564
Length adjustment: 8
Effective length of query: 155
Effective length of database: 556
Effective search space:    86180
Effective search space used:    86180
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)