BAC Information

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BAC

Clone NameMSMg01-437C09
ChromosomeX (Build37)
Map Location 15,498,281 - 15,498,512
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668991, 4930403L05Rik
Downstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437C09.T7 (MSMg01no437_c09.b1)MSMg01-437C09.TJ (MSMg01no437_c09.g1)
ACCAG528049AG528050
length755744
length of high quality
(start - end)
232 (78 - 309)414 (78 - 491)
definitionCHROMAT_FILE: MSMg01no437_c09.b1 PHD_FILE: MSMg01no437_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:25 2005CHROMAT_FILE: MSMg01no437_c09.g1 PHD_FILE: MSMg01no437_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATG
CGCGGAATTCCTCACCATTACCTCATCATATAACTTTGAGGCTCATTGTA
TTATTCTATGTATGTTATTTTCAATTTGTCACACTCAGACATTAGCATAG
CACGTGCTTCTGGGCCAACTGAAGGCACAAGATTCTAACAGAAGTAAGCA
TATATACACATTTATCAGGCCAGGGCTGTCCTGGTGGAAAGTTCACAGAA
AAGGAGATCATTGTAGAACATTCTAGACACACATTGATCTCCAAACAGAA
GAAATCAAATCAAGTCCATGTGTTATTTTGTTTTAGGCAATTTCTAAGGA
TCAAAGAAAGCCAATAGGAATGATTTGCCTACAAAGGACACTATTACAAA
CATCAAAAGCATCAATATAATGCCGAAACTAATGACACGTTATATCCATA
GTGTGAGAAATTCACGACTGCTTACTAAGTTTCCCTACCATTGCCTAGGC
TCATGTACTATGATCATTCCAGGTGCTCTAGAGATCTGGATAGCTAGGCA
TACTTCTATCAGGGCTTCCCAGGAGAGGCTTATTTGACCCACAACTCAAG
AAGAGGTACTATGATTTCCGCTCAGCAATCATTTTGAATGAACCCTGAAC
TCGCGCATGATTACTCCATATTTTGATTCGATTCATTCACCCAGTCAATT
TCTAAGATGTCCTTACCGCATTAGAGCCCTATGTGCATTCGTCGGAGCAT
TATTA
TCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATAATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAATATTGGATATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAAATGAA
TTTATGAAATTCCTAGGCATATGGATGGACCTGGAGGGCATCATCCCGAG
TGAGGTAACACATTCTCTAAGGAACTCCACAATATGTACTCACTGACAAG
TGCATATTAGCCCCTACTCTAGGACACCTTAGATACTTTATACCTTTTGC
CATATACCTGTATCTCTAAAATAATGTTGACTGAACCGTGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_c09.b1 MSMg01no437_c09.b1 CHROMAT_FILE:
MSMg01no437_c09.b1 PHD_FILE: MSMg01no437_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:25 2005
         (232 letters)



>mm_chrX_15498081_15498712
          Length = 632

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataactttgaggctcattgtattattctatgtatgttattttcaatttgtcacactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atataactttgaggctcattgtattattctatgtatgttattttcaatttgtcacactca 373

                                                                       
Query: 61  gacattagcatagcacgtgcttctgggccaactgaaggcacaagattctaacagaagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gacattagcatagcacgtgcttctgggccaactgaaggcacaagattctaacagaagtaa 313

                                                                       
Query: 121 gcatatatacacatttatcaggccagggctgtcctggtggaaagttcacagaaaaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gcatatatacacatttatcaggccagggctgtcctggtggaaagttcacagaaaaggaga 253

                                                               
Query: 181 tcattgtagaacattctagacacacattgatctccaaacagaagaaatcaaa 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tcattgtagaacattctagacacacattgatctccaaacagaagaaatcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)