Query= MSMg01no437_m13.b1 MSMg01no437_m13.b1 CHROMAT_FILE:
MSMg01no437_m13.b1 PHD_FILE: MSMg01no437_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:17 2005
(593 letters)
>mm_chrX_112247096_112248088
Length = 993
Score = 859 bits (444), Expect = 0.0
Identities = 486/500 (97%)
Strand = Plus / Minus
Query: 82 attaactggttatcatataaaatgtaatatcatacattttcagtaagtaaccatagccat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 attaactggttatcatataaaatgtaatatcatacattttcagtaagtaaccatagccat 933
Query: 142 caaaaaggatagcaggtcaattcattcaactattgtagtatttaacagtaatttagatat 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 caaaaaggatagcaggtcaattcattcaactattgtagtatttaacagtaatttagatat 873
Query: 202 aagtaggaaggcttacttttagaatttcatagtaatacatacagttataaagttataaaa 261
|| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||
Sbjct: 872 aaataggaaggcttacttttagaatttcatagtattaaatacagttataaaattataaaa 813
Query: 262 ttaaaatatcattaacaaataatttttattagctctgggctttgtacttcattgtttatt 321
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 812 ttaaaatatcattaacaaataatttttattagctctgggctttctacttcattgtttatt 753
Query: 322 agcatcttaaaaattgggatgcttttaaaaataaaaattcagaaacttagtggactataa 381
| |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 752 aacatcttcaaaattgggatacttttaaaaatcaaaattcagaaacttagtggactataa 693
Query: 382 tagatattttcatgaaactaactgaactatccaaatactagtgatactttgattgcattt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tagatattttcatgaaactaactgaactatccaaatactagtgatactttgattgcattt 633
Query: 442 ctccttatcaccaagtatctgaaagtgacagtttctattgacaatcaaaaaatgtggttt 501
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 632 ctccttatcatgaagtatctgaaagtgacagtttctattgacaatcaaaaactgtggttt 573
Query: 502 tattattacaaaatacaaactcaggggaaaaaatgagctaaatacaaaaagagtaattag 561
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 572 tattattacaaaatacaaactcagggggaaaaatgagctaaatacaaaaagagtaattag 513
Query: 562 aatataatcagaagctgcag 581
|||||||||||| |||||||
Sbjct: 512 aatataatcagaggctgcag 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_m13.g1 MSMg01no437_m13.g1 CHROMAT_FILE:
MSMg01no437_m13.g1 PHD_FILE: MSMg01no437_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:17 2005
(592 letters)
>mm_chrX_112175582_112176573
Length = 992
Score = 1069 bits (553), Expect = 0.0
Identities = 583/593 (98%), Gaps = 3/593 (0%)
Strand = Plus / Plus
Query: 1 cacttgcctctgcctcccaaatactgggattaaaggcgtgcatcaccactgtctggcata 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cacttgcctctgcctcccaaatactgggattaaaggcgtgcatcaccactgtctggcat- 260
Query: 61 ttttgttagattttggaagagattcatgaagtgtttgtaccaatttaaatatgtttgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgttagattttggaagagattcatgaagtgtttgtaccaatttaaatatgtttgaaa 320
Query: 121 aacatgttccctcaactttgctatctactagtagataacctataaactattaatttctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatgttccctcaactttgctatctactagtagataacctataaactattaatttctat 380
Query: 181 ttgccttaggaaaccatttactttgctattttcagtttgtttatctttatcaatgataca 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttgccttaggaaaccatttactttgctatttccagtttgtttatctttatcaatgataca 440
Query: 241 cactatgcttattggacaattgtttctagcatat-aaactactgtttttcaggctccaag 299
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 441 cactatgcttattggacaattgtttctagca-attaaactactgtttttcaggctccaag 499
Query: 300 acattgtttaatagttaaaagaaaacaaacaaaatagtgggcaatctgaacagctgccta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acattgtttaatagttaaaagaaaacaaacaaaatagtgggcaatctgaacagctgccta 559
Query: 360 gaagataatgggtaagagaaggaaaaaaagccaggccggttgagataagttgaaatgaag 419
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 560 gaagataatgggtaagagaaggaaaaaaagccatgccggttgagataagctgaaatgaag 619
Query: 420 ttcaagaacatagcagcaggcagccacacagatgggacaggagttttggaaaagagcaag 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 ttcaagaacatagcagcaggcagccacacagatgggacaggagttttggagaagagcaag 679
Query: 480 caagctcaacttacaagggagtttgatagcatacttcagttctggccaacatccaaaaga 539
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 680 caagctcagtttacaagggagtttgatagcatacttcagttctggccaacatccaaatga 739
Query: 540 acatgaaagagaaaaacaaaaagtaacagttacacacttctgagtcaggactc 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acatgaaagagaaaaacaaaaagtaacagttacacacttctgagtcaggactc 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
