BAC Information

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BAC

Clone NameMSMg01-439F10
ChromosomeX (Build37)
Map Location 65,797,953 - 65,922,898
singlet/doubletdoublet
Overlap geneLOC434788
Upstream geneGm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194, EG236844, LOC385372, LOC627888
Downstream geneFmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255, Aff2, EG666577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439F10.T7 (MSMg01no439_f10.b1)MSMg01-439F10.TJ (MSMg01no439_f10.g1)
ACCAG529716AG529717
length757759
length of high quality
(start - end)
424 (70 - 493)236 (78 - 313)
definitionCHROMAT_FILE: MSMg01no439_f10.b1 PHD_FILE: MSMg01no439_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:26 2005CHROMAT_FILE: MSMg01no439_f10.g1 PHD_FILE: MSMg01no439_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,797,953 - 65,798,314)(65,922,663 - 65,922,898)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAAGAGAATCCGCGGA
ATTCCATGTCTTCCGGGCTCAATATGAATAGATTTGCCTTTTTTCTTAAC
ATTAATGTCTTCAGTGCAAAAACAGAAACTCTGAGCTGAATTGTTTTATC
AGTGGGTGAAATGATGCAGTAGCCCGATACTATATGCCTTAAACATTTGA
TGCTTCCCATCTCTTCTTTGCATCATTTATTACTGAAACATGCTATATTC
TTAGATACTCAGCAATAGATAATCAGGTTTCTCACATTGTTGGTAACAAC
TAGTAGCCAATCATTATTTTTCAACTCATTAGAAGTAGCTTTATACATGA
ACAAAGACCTATTTTTCCTTCTATAATATCTGTTCTTTCTGATTCTCATT
CTAATGCCTCACATATGAAACTATGATTTTTGCCCTTCCGCTCCACTCGA
GACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCA
AGGGTCCACACGGGACTCCCCACGTGACCCTAAGACCTCTGGTGAGTGGA
TTTTATTGCCTGCCCCAATCCATTCGCGCGGAATTTTGATAATGCGGTAC
CTAAGTGAACCTGCCTTTCCCGTGCCCGGAACTGGGGGTACCAAGTCTTT
CTCCCTTCTTTTTTATTTCCCCCCTTATTTTTTTTCTCCACACACCTTGT
CCTTTTTTTCTCCACGGGCCTTTTATCTTTTTTTTCCCCCCGCCCCCCTC
TCAATCT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGAATGACTTTCTGCATAGAACATAA
CTCTCCAAAATATATGCAAATGAGATAGGTTTCTACTCCTTAAAGGTACC
AAAATACTTTCTGTGTGAAATTTTACTTGTAAGGTGAAAGGATCCATGTC
ATTGTCTGGGAAGGTAGATAAGCCAATGTTTAGGTTGTTTATGAGTCTGA
GCAATTGGTGGCTGAGTTTCCGGGATTTTGGAGTGTTCTCCACATCCTAT
ATGTAATGACTTTGATANCTAAAGGCTCTTCTTTATTTGGTAAGCTTAGA
AAATCTTTTTCAAATGTTTAATGATTTTATTTTTAAAACGAGTTAGGCAT
AACTAGTTTTGCCGTGCGTAGAATTTCTATTTCTTGACCATTGCTACTGA
ATACTCCCCTGTCTTTTGCCCACCCCACTTTTATTTTCTTTACTCATTCC
TACTTCCTTCTTTTTCCTCCTCCCTTTCCCACTCCCCCCCCTCTTCTTTT
TTCTCTTTTTTCTTCTCCTCTCCCTTTCCTCCCCTTCTTTTCCCCCTCTC
TCTTATCTTCACTTCTTTTTCCCTTTCTCCTTTTTCCTTTAAACCTTTTT
TAACTTCTCTCTTTTTTCCCCATCCCCTATTTCTCACTTACTTTTTATTT
CCCTCCCCCTCCCCCTTATTCTCCCCCTTTTTCTTTTTTTACTTCCCTCT
TCTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_f10.b1 MSMg01no439_f10.b1 CHROMAT_FILE:
MSMg01no439_f10.b1 PHD_FILE: MSMg01no439_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:26 2005
         (424 letters)



>mm_chrX_65797753_65798576
          Length = 824

 Score =  654 bits (338), Expect = 0.0
 Identities = 356/362 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatatgaatagatttgccttttttcttaacattaatgtcttcagtgcaaaaacagaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatatgaatagatttgccttttttcttaacattaatgtcttcagtgcaaaaacagaaac 260

                                                                       
Query: 61  tctgagctgaattgttttatcagtgggtgaaatgatgcagtagcccgatactatatgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tctgagctgaattgttttatcagtgggtgaaatgatgcagtagcccgatactatatgtct 320

                                                                       
Query: 121 taaacatttgatgcttcccatctcttctttgcatcatttattactgaaacatgctatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacatttgatgcttcccatctcttctttgcatcatttattactgaaacatgctatatt 380

                                                                       
Query: 181 cttagatactcagcaatagataatcaggtttctcacattgttggtaacaactagtagcca 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagatactcagcaatagataatcaggtttctcacattgttggtaacaactagtagcca 440

                                                                       
Query: 241 atcattatttttcaactcattagaagtagctttatacatgaacaaagacctatttttcct 300
           |||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagtaaacttcaactcattagaagtagctttatacatgaacaaagacctatttttcct 500

                                                                       
Query: 301 tctataatatctgttctttctgattctcattctaatgcctcacatatgaaactatgattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctataatatctgttctttctgattctcattctaatgcctcacatatgaaactatgattt 560

             
Query: 361 tt 362
           ||
Sbjct: 561 tt 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no439_f10.g1 MSMg01no439_f10.g1 CHROMAT_FILE:
MSMg01no439_f10.g1 PHD_FILE: MSMg01no439_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:26 2005
         (236 letters)



>mm_chrX_65922463_65923098
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgactttctgcatagaacataactctccaaaatatatgcaaatgagataggtttctact 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atgactttctgcatagaacagaactctccaaaatatatgcaaatgagataggtttctact 377

                                                                       
Query: 61  ccttaaaggtaccaaaatactttctgtgtgaaattttacttgtaaggtgaaaggatccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccttaaaggtaccaaaatactttctgtgtgaaattttacttgtaaggtgaaaggatccat 317

                                                                       
Query: 121 gtcattgtctgggaaggtagataagccaatgtttaggttgtttatgagtctgagcaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtcattgtctgggaaggtagataagccaatgtttaggttgtttatgagtctgagcaattg 257

                                                                   
Query: 181 gtggctgagtttccgggattttggagtgttctccacatcctatatgtaatgacttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtggctgagtttccgggattttggagtgttctccacatcctatatgtaatgacttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)