BAC Information

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BAC

Clone NameMSMg01-439H08
ChromosomeX (Build37)
Map Location 121,325,140 - 121,325,538
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439H08.T7 (MSMg01no439_h08.b1)MSMg01-439H08.TJ (MSMg01no439_h08.g1)
ACCAG529807AG529808
length780749
length of high quality
(start - end)
436 (67 - 502)166 (80 - 245)
definitionCHROMAT_FILE: MSMg01no439_h08.b1 PHD_FILE: MSMg01no439_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:35 2005CHROMAT_FILE: MSMg01no439_h08.g1 PHD_FILE: MSMg01no439_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTCTAAACTTGTGGCGCTANACGACTCACTATTTCCAGAGGATCCGCGGA
ATTCCAGGACTTCCAGGGCTATACAGAGAAACTCTGTATCGAAAAAAAGA
AAATCCAAAAACAAGTGAACAAAAAACTTAACCCAATCCAAAAAAAACAA
AAAAACAAAAAAAATCCAAAAAAAAACCAAAAACAAACAAACAAACAAAA
AAACCACCCCCCCAAAATACTAAAAAACAAAAATCATAAAAAAAACTTTA
AAGCCTAAAAAAAACCCAAACCCTGAAGAACCCTAATATCCTAAAAAAAA
AAGAAAAAACAGAAAAAAACACTACTAATACACTAAAATACTGAAAACCA
AAAACACCTCTAAAACACTCTTCTTAATACCCTAGAAAACTCTTAAGAAG
AACACTAAAATTCTAAAAAATTAAGAATATAAAAGAATGTAAAAATGACC
CCAAAAGTGGGCTTATTCTTGTTTTTTTGTTTTTTTTGAGTTTTTGGAGA
CTGGATTTCCTGTATCTGTGGCTGTTCTGGAGCTCTGTCTGTAGACCAGG
CTGTCCATTAAATCCACAAAACCTCCAACCTCGGCCCTCCTAATTGCTGG
GAATTAAAGGAATGGGCCCACCTTTTGCTTGTGTAACCAAAAAACAAATA
AAATGCCCCCAAAATAAAAAATTCAAATTGGTGTTCTCCCTGTGAGAAGC
CACACACCCCACCACCTCTTTGAAAATAAACGGCCATTTCTCTCTTTTCT
CTATCGCCTCTCCGCGTCAATCTCTTTTGG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCAACGACCGTCGANGNTGCCTATTCAGGGACATTCAG
AATTGCCTTTGGTATTACACTATCATTTAGAATAAAAGCCAAATCACTCC
CACATACAGGAATTTACAATGGTTTAGGCAGTAGATCTGGCTGTGGTTTT
AGGGTAATGAGATGGTTAGCTAGAGCCAAACTCCCTAATTAGAAATATTA
TTTGGGCGCGAAAGCCATTGCCCTAGGAGTGTAAGACCTCACACCTGGCT
TCCAAGACTTTATTTGATCATTTANAGGGCCGACCTTGCCCCAGCCGGAN
TATTGTTTATTTCCCGCCCGTCTTTGTGTCTACATTCCTCTGTTCCGTGC
CATAGCCTTTACCCCCCCCATTACCTCACTTGTACTTCGCCCATGCGCCA
CTTACCCTCCCTATTTTTTCGCGCCCCACATGTTTGATCTTCACTTCGTC
CTATGACCTCCTTATCCTATACCCTCTCACGCGCCCCCCCCTCCTTTTTT
CCTTTTATCTTTCATCTCCCCTTTTATCCCTTTTCTCCCCCTCTTGTTCT
TCTTACCTTCTTTTCACTCTCTTGCGTTTCCACTTGACCGAAAATTATTT
TTTTTTTTTTTCTCGATCCCCTTATTTACTACTTTCTCTTTCACCTCCCC
CTCCCTCTTTCTCCCCCTTTTTCGTTTATATCTTCCCTCTTTTCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_h08.b1 MSMg01no439_h08.b1 CHROMAT_FILE:
MSMg01no439_h08.b1 PHD_FILE: MSMg01no439_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:35 2005
         (436 letters)



>mm_chrX_121324714_121325551
          Length = 838

 Score =  427 bits (221), Expect = e-124
 Identities = 359/425 (84%), Gaps = 43/425 (10%)
 Strand = Plus / Minus

                                                                       
Query: 26  aaaaaaagaaaatccaaaaacaagtgaac-aaaaaacttaacccaatccaaaaaaaacaa 84
           ||||||| ||||||||||||||||  ||| ||||||| ||||||||   | |||||||||
Sbjct: 825 aaaaaaa-aaaatccaaaaacaagcaaacaaaaaaacctaacccaa---acaaaaaacaa 770

                                                                       
Query: 85  aaaaacaaaaaaaatccaaaaaaaaaccaaaaacaaacaaacaaacaaaaaaacc-accc 143
           | |||||||       ||||||      ||||||       ||||| |||||||| ||||
Sbjct: 769 acaaacaaa-------caaaaa------aaaaac-------caaaccaaaaaaccaaccc 730

                                                                       
Query: 144 cccc---aaaatact--aaaaaacaaaaatcataaaaaaaactttaaagcctaaaaaaaa 198
           ||||   ||||||||  |||||| ||||||||| | | |||||||||||||| |||||||
Sbjct: 729 ccccaaaaaaatactaaaaaaaaaaaaaatcat-agacaaactttaaagcct-aaaaaaa 672

                                                                       
Query: 199 cccaaaccctgaagaaccctaatatcct--------aaaaaaaaaagaaaaaacagaaaa 250
           ||||||||||||| ||||||||||||||        |||||||||| |||||||||||||
Sbjct: 671 cccaaaccctgaaaaaccctaatatcctaaaaaaaaaaaaaaaaaaaaaaaaacagaaaa 612

                                                                       
Query: 251 aaacactactaatacactaaaatactgaaaaccaaaaacacctctaaaacactcttctta 310
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aaacactacaaatacactaaaatactgaaaaccaaaaacacctctaaaacactcttctta 552

                                                                       
Query: 311 ataccctagaaaactcttaagaagaacactaaaattctaaaaaattaagaatataaaaga 370
           | | |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 551 aaatcctacaaaactcttaagaagaacactaaaattctaaaaaattaaaaatatacaaga 492

                                                                       
Query: 371 atgtaaaaatgaccccaaaagtgggcttattcttgttttttt--gttttttttgagtttt 428
           | |||||| |||||| |||| |||||||||| ||||||||||  || |||||||||||||
Sbjct: 491 acgtaaaagtgacccaaaaactgggcttatttttgtttttttttgtgttttttgagtttt 432

                
Query: 429 tggag 433
           |||||
Sbjct: 431 tggag 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 838
Length adjustment: 9
Effective length of query: 427
Effective length of database: 829
Effective search space:   353983
Effective search space used:   353983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)