Query= MSMg01no439_l04.b1 MSMg01no439_l04.b1 CHROMAT_FILE:
MSMg01no439_l04.b1 PHD_FILE: MSMg01no439_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:53 2005
(509 letters)
>mm_chrX_16378448_16379356
Length = 909
Score = 948 bits (490), Expect = 0.0
Identities = 502/506 (99%), Gaps = 1/506 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttgatac-cagtcacagcagggaaatcaaagagcaagtctgaatttgagatg 63
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatttgagacacagtcacagcagggaaatcaaagagcaagtctgaatttgagatg 263
Query: 64 gcccttcagagttccctggatcaagacaaagattctatgtctttatgccaccacattgat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcccttcagagttccctggatcaagacaaagattctatgtctttatgccaccacattgat 323
Query: 124 tgcagggtggtctcagggaagggcaacacgcatgcatgagtctatttcctccactcacgg 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 tgcagggtggtctcagggaagggcaacactcatgcatgagtctatttcctccactcacgg 383
Query: 184 gcaattgctatagaaattttcaactgtgggccagtagcttccaaaattatcagcccatgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcaattgctatagaaattttcaactgtgggccagtagcttccaaaattatcagcccatgc 443
Query: 244 tctatgtattttcaatatacaacatacaacaacattataaaatatacaacatattgtata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctatgtattttcaatatacaacatacaacaacattataaaatatacaacatattgtata 503
Query: 304 caacaacaatatacaatgtacaacaaaacattgtcattttaaagtcacctcaagtgaggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caacaacaatatacaatgtacaacaaaacattgtcattttaaagtcacctcaagtgaggg 563
Query: 364 atggggttgccatcccaaaatcacaactctgacccataattgtttttgtctgaaagaatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggggttgccatcccaaaatcacaactctgacccataattgtttttgtctgaaagaatt 623
Query: 424 acagggatggaaacacagaggatcctgaggaaaagaaagtccagcatagaccccaagtag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 624 acagggatggaaacacagaggatcctgaggaaaagaaagtccagcatagacccaaagtag 683
Query: 484 gatccagctcaattagaggccccaag 509
||||||||||||||||||||||||||
Sbjct: 684 gatccagctcaattagaggccccaag 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_l04.g1 MSMg01no439_l04.g1 CHROMAT_FILE:
MSMg01no439_l04.g1 PHD_FILE: MSMg01no439_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:54 2005
(331 letters)
>mm_chrX_16560174_16560904
Length = 731
Score = 625 bits (323), Expect = 0.0
Identities = 329/331 (99%)
Strand = Plus / Minus
Query: 1 cacttgctacatgatttccccatcaattcttatttacttagtcattttttattaaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cacttgctacatgatttccccatcaattcttatttacttagtcattttttattaaaatgc 472
Query: 61 aactgaggctctttttataatttgaatatgaaatgccttccactggattacaagtgtgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aactgaggctctttttataatttgaatatgaaatgccttccactggattacaagtgtgag 412
Query: 121 tcttgtcagatgatgggcattggggaagtgattggatcctgagggctctgagataatcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcttgtcagatgatgggcattggggaagtgattggatcctgagggctctgagataatcga 352
Query: 181 tggtttaagcccttgatggattcagaatatgacagtattatggggagcttgtagaaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tggtttaagcccttgatggattcagaatatgacagtattatggggagcttgtagaaagaa 292
Query: 241 ggaagaagtagggccccgagggcatgccctggaatgacttatctcatctactgtcccttc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 291 ggaagaagtagggccccgagggcatgccctggaatgacttatctcatctactatcccttc 232
Query: 301 tccctctgcttcatgactgacatgacgtgag 331
||||||||||||||||||||||||| |||||
Sbjct: 231 tccctctgcttcatgactgacatgaagtgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
