MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-439M13
Chromosome	X (Build37)
Map Location	49,868,987 - 49,869,484
singlet/doublet	singlet
Overlap gene	Gpc3
Upstream gene	Hs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4
Downstream gene	Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd
Link	Open Mouse BAC browser

Click to get alignment info.

name	Hs6st2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50786 MGI:1354959
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Usp26 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83563 MGI:1933247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040479 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040479
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	LOC665888 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665888
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	1700080O16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74279 MGI:1921529
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC100040495 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040495
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Gpc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14735 MGI:104902
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14734 MGI:104903
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kis2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:751866 MGI:3617487
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041925 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041925
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 235 ESTs, 9 Proteins pseudo : _no_value

name	LOC665929 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665929
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	6330534C20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434778 MGI:3588225
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC624936 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624936
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 48 Proteins pseudo : _no_value

name	LOC546298 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546298
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 mRNAs, 2934 ESTs, 9 Proteins

name	LOC100040569 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040569
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs

name	Phf6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70998 MGI:1918248
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hprt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15452 MGI:96217
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C430049B03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72575 MGI:1924903
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Plac1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56096 MGI:1926287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4632404H22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78755 MGI:1926005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930432H15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73866 MGI:1921116
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC385527 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385527
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Mospd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70380 MGI:1917630
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040609 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040609
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 45 Proteins pseudo : _no_value

name	Etd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69501 MGI:1916751
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hs6st2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116284407 GeneID:50786 MGI:1354959
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heparan sulfate 6-O-sulfotransferase 2 transcript_id : NM_001077202.1

name	Hs6st2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116284405 GeneID:50786 MGI:1354959
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heparan sulfate 6-O-sulfotransferase 2 transcript_id : NM_015819.3

name	Usp26 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13878220 GeneID:83563 MGI:1933247
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 26 transcript_id : NM_031388.1

name	LOC100040479 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271539 GeneID:100040479
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein LOC100040479 transcript_id : XM_001474763.1

name	1700080O16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407367 GeneID:74279 MGI:1921529
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 1700080O16 gene transcript_id : XM_135858.3

name	LOC100040495 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271541 GeneID:100040495
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to 1700080O16Rik protein transcript_id : XM_001474805.1

name	Gpc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680058 GeneID:14735 MGI:104902
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glypican 4 transcript_id : NM_008150.1

name	Gpc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980679 GeneID:14734 MGI:104903
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glypican 3 transcript_id : NM_016697.2

name	6330534C20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85702180 GeneID:434778 MGI:3588225
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6330534C20 gene transcript_id : NM_001034059.1

name	LOC546298 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271562 GeneID:546298
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 mRNAs, 2934 ESTs, 9 Proteins product : similar to ribosomal protein S2 transcript_id : XM_001477049.1

name	LOC100040569 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271543 GeneID:100040569
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs product : hypothetical protein LOC100040569 transcript_id : XM_001474921.1

name	Phf6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33563291 GeneID:70998 MGI:1918248
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PHD finger protein 6 transcript_id : NM_027642.1

name	Hprt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:96975137 GeneID:15452 MGI:96217
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypoxanthine guanine phosphoribosyl transferase 1 transcript_id : NM_013556.2

name	C430049B03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407371 GeneID:72575 MGI:1924903
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA C430049B03 gene transcript_id : XM_980571.1

name	Plac1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360115 GeneID:56096 MGI:1926287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : placental specific protein 1 transcript_id : NM_019538.4

name	4632404H22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348852 GeneID:78755 MGI:1926005
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4632404H22 gene transcript_id : NM_030167.2

name	4930432H15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:131888240 GeneID:73866 MGI:1921116
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930432H15 gene transcript_id : NM_028671.2

name	Mospd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802204 GeneID:70380 MGI:1917630
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : motile sperm domain containing 1 transcript_id : NM_027409.2

name	Etd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341018 GeneID:69501 MGI:1916751
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : embryonic testis differentiation transcript_id : NM_175147.2

name	Hs6st2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116284408 GeneID:50786 MGI:1354959
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : heparan sulfate 6-O-sulfotransferase 2 isoform 1 protein_id : NP_001070670.1

name	Hs6st2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116284406 GeneID:50786 MGI:1354959
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : heparan sulfate 6-O-sulfotransferase 2 isoform 2 protein_id : NP_056634.3

name	Usp26 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13878221 CCDS:CCDS30122.1 GeneID:83563 MGI:1933247
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin specific protease 26 protein_id : NP_113565.1

name	LOC100040479 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271540 GeneID:100040479
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474813.1

name	LOC100040495 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271542 GeneID:100040495
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474855.1

name	1700080O16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407368 GeneID:74279 MGI:1921529
definition	codon_start : 1 product : hypothetical protein LOC74279 protein_id : XP_135858.2

name	Gpc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680059 CCDS:CCDS30124.1 GeneID:14735 MGI:104902
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glypican 4 protein_id : NP_032176.1

name	Gpc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980680 CCDS:CCDS30125.1 GeneID:14734 MGI:104903
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA] GO_process : GO:0008285 - negative regulation of cell proliferation [Evidence IGI]; GO:0045926 - negative regulation of growth [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0030513 - positive regulation of BMP signaling pathway [Evidence IMP]; GO:0001658 - ureteric bud branching [Evidence IGI] codon_start : 1 product : glypican 3 protein_id : NP_057906.2

name	6330534C20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702181 CCDS:CCDS30126.1 GeneID:434778 MGI:3588225
definition	codon_start : 1 product : hypothetical protein LOC434778 protein_id : NP_001029231.1

name	LOC546298 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271563 GeneID:546298
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477099.1

name	LOC100040569 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271544 GeneID:100040569
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474971.1

name	Phf6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563292 CCDS:CCDS30127.1 GeneID:70998 MGI:1918248
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : PHD finger protein 6 protein_id : NP_081918.1

name	Hprt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:96975138 GeneID:15452 MGI:96217
definition	EC_number : 2.4.2.8 GO_component : GO:0005737 - cytoplasm [Evidence IEA] [Evidence IDA] GO_function : GO:0004422 - hypoxanthine phosphoribosyltransferase activity [Evidence IDA] [Evidence IMP]; GO:0042802 - identical protein binding [Evidence IPI]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0046083 - adenine metabolism [Evidence IMP] [Evidence IGI]; GO:0006168 - adenine salvage [Evidence IMP]; GO:0007610 - behavior [Evidence IMP]; GO:0021954 - central nervous system neuron development [Evidence IMP]; GO:0021895 - cerebral cortex neuron differentiation [Evidence IMP]; GO:0019835 - cytolysis [Evidence IMP]; GO:0048813 - dendrite morphogenesis [Evidence IMP]; GO:0042417 - dopamine metabolism [Evidence IMP]; GO:0007625 - grooming behavior [Evidence IGI]; GO:0006178 - guanine salvage [Evidence IMP]; GO:0046100 - hypoxanthine metabolism [Evidence IMP] [Evidence IC]; GO:0046651 - lymphocyte proliferation [Evidence IMP]; GO:0009116 - nucleoside metabolism [Evidence IEA]; GO:0045964 - positive regulation of dopamine metabolism [Evidence IMP]; GO:0006164 - purine nucleotide biosynthesis [Evidence IMP]; GO:0006166 - purine ribonucleoside salvage [Evidence IMP] [Evidence IGI]; GO:0001975 - response to amphetamine [Evidence IMP]; GO:0021756 - striatum development [Evidence IMP] codon_start : 1 product : hypoxanthine guanine phosphoribosyl transferase 1 protein_id : NP_038584.2

name	C430049B03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407372 GeneID:72575 MGI:1924903
definition	codon_start : 1 product : hypothetical protein LOC72575 protein_id : XP_985665.1

name	Plac1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506575 CCDS:CCDS30128.1 GeneID:56096 MGI:1926287
definition	codon_start : 1 note : ectoplacental cone, invasive trophoblast giant cells, extraembryonic ectoderm and chorion sequence 26 product : placental specific protein 1 protein_id : NP_062411.1

name	4632404H22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313466 CCDS:CCDS30129.1 GeneID:78755 MGI:1926005
definition	codon_start : 1 product : hypothetical protein LOC78755 protein_id : NP_084443.1

name	4930432H15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312034 GeneID:73866 MGI:1921116
definition	codon_start : 1 product : hypothetical protein LOC73866 protein_id : NP_082947.1

name	Mospd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312580 CCDS:CCDS30131.1 GeneID:70380 MGI:1917630
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 product : motile sperm domain containing 1 protein_id : NP_081685.1

name	Etd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28201997 GeneID:69501 MGI:1916751
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : embryonic testis differentiation-associated product : embryonic testis differentiation protein_id : NP_780356.1

name	LOC665888 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665888
definition	number : 1 pseudo : _no_value

name	LOC665929 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665929
definition	number : 1 pseudo : _no_value

name	LOC624936 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624936
definition	number : 1 pseudo : _no_value

name	LOC624936 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624936
definition	number : 2 pseudo : _no_value

name	LOC624936 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624936
definition	number : 3 pseudo : _no_value

name	LOC624936 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624936
definition	number : 4 pseudo : _no_value

name	LOC624936 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624936
definition	number : 5 pseudo : _no_value

name	LOC624936 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624936
definition	number : 6 pseudo : _no_value

name	LOC385527 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385527
definition	number : 1 pseudo : _no_value

name	LOC385527 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385527
definition	number : 2 pseudo : _no_value

name	Kis2 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:114796628 GeneID:751866 MGI:3617487
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Kaplan integration site 2 transcript_id : NR_003188.1

name	LOC100041925 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271561 GeneID:100041925
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 235 ESTs, 9 Proteins product : similar to ribosomal protein S17 pseudo : _no_value transcript_id : XR_033016.1

name	LOC100040609 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271545 GeneID:100040609
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 45 Proteins product : similar to casein kinase 1, gamma 3 pseudo : _no_value transcript_id : XR_032024.1

clone name	MSMg01-232B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102F22
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-439M13.T7 (MSMg01no439_m13.b1)	MSMg01-439M13.TJ (MSMg01no439_m13.g1)
ACC	AG530054	AG530055
length	747	725
length of high quality (start - end)	504 (44 - 547)	529 (71 - 599)
definition	CHROMAT_FILE: MSMg01no439_m13.b1 PHD_FILE: MSMg01no439_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:00 2005	CHROMAT_FILE: MSMg01no439_m13.g1 PHD_FILE: MSMg01no439_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:00 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CCTATAATTTTGCGGCGCTAATACAATCACTATATCGAGAGGATCCGCGG AATTCATTCCTTGCAAAGGGAATGAATGGTGAGAAAATGTATCAGCTAAG TAATCACTTTTTTTATTCCAATATTGATTACCCCCCCCTTTTATAACTCC TCACTGTGAATTTTCTACTCCACCTTTTCATGACTATTGTCCCCACTCCC TGCCAAGCGATATTGGAGGAAGTCATGAGTTTTTGCCATTTCTGTAGAAT AAACCAGTCACCCAGCTTAACTTTACCCAAGTCCTGGCTGATATTTCACG AGGCCTTTAGTCATACTTTGCCACTTTCTTCCATTATTTATGCTTTCCCT CACTTTAAATTCTTCCTAAATATCCCAAGTCCCAAATGCAATCCTGGCCT CCCCAACCTTAGCAAGTGAGATGTCTCTGATAAGACAGAAGATTTTAAGC ATGCATTTCCTGGGATTCCATGCATCTTTCTTGACCCAATCTCCCACTCC CTTCCTTTCATTGTCAAACGTATGACAAGAGGAGTCAGCTCTCACTTCCT CGCCCTTCATTTTGTGACTTTCACGCTCATTACACTAATGGAAAGTGGTT CTCAAATGTCCCCCAATGACTTCCAAAATGGCCCTCCTAAACCCCTATTT CCTTTCACCTCTTCTGTAAAACTCTGGCAAAGCTAAACCCGCCTTTTCCC TGGGTGGCTTTTCTTGCCAACTTAAAACCTCCGAAAATTCTTTTTTT	ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXAATGACAGCTTTGGTTCTATAGCAAAATTC TGTCTCAAAAAAAAATCAGTGCAAACAGTATTATCAAGAGAGTAAGAAGA CACAGAATGGGAAACATATCTGCAATTCACTAATCTAATAACAGTTCACT ATCCTGAATATATAAAGAGTTTCTATAGCTCCATAACAAAAGACAAATAT TCCAATTAAAAACTGGCAAATGATTTGAATAGGTATTTCTCTAAAGATAA GCTACAATGATCTTTTTTCACATGGGAGAATTGTTCAACATCAGGAGTCA CTGGGGAAATACAAATTCAAAATACAATGAGACACTGCTTCGCAGTCACA AGAATGATTATAATGAGAAAACACTAGAAGTTTAAGCCCACATACATTGC TATTTAGAATAGAAAATTGTATATTCTCTTTGGCAATTCTTTAAGAAGGG GAGCAGAATGTTGCTGTAGGACCCAGCAATCTCATTCCTGGAGATATTGA AAATACTCAATCATATTGAAACTTTAGGTCCAGATCTAGAGAGATAATTC AGTTGATAATATGCATCTCACATAAGCACAAGGACCTGAACTCATCTCCC AGTGCCCGTATAAAAAGACCTGGTGAGAGGTATGAACGGATGGTACGGTC TCCCTTTTCTTTCCCCCCATCTCCT
quality values	Open. Hide. 10 10 11 11 11 11 12 9 10 19 11 9 8 9 10 15 27 24 26 26 13 8 8 12 8 8 12 15 13 13 10 23 9 7 7 8 7 7 10 11 9 9 9 11 19 23 59 47 43 19 12 13 19 23 23 30 30 32 34 32 32 16 16 10 10 10 12 23 23 30 33 33 33 33 33 39 53 38 38 42 42 42 57 57 42 42 40 40 40 47 47 47 47 43 43 50 57 68 68 68 68 68 48 53 68 68 68 68 68 68 68 68 68 68 68 68 51 51 47 47 57 50 57 68 51 51 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 48 48 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 32 32 41 43 43 57 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 43 48 59 59 59 68 57 54 54 54 54 54 57 59 59 59 59 59 59 59 57 43 42 42 39 39 59 32 35 15 30 30 44 41 59 57 59 57 59 59 59 48 47 47 47 47 44 44 44 37 30 30 22 30 30 37 40 41 48 59 59 59 59 48 59 46 46 46 41 34 34 28 22 22 30 34 41 41 41 41 41 48 48 48 46 41 41 41 39 39 39 41 41 41 36 39 39 35 29 23 22 22 22 20 22 27 35 36 37 39 34 28 23 18 14 14 19 20 13 13 11 11 11 27 29 59 36 32 25 23 19 19 19 22 22 26 20 18 19 15 15 14 11 10 9 12 12 22 22 25 17 17 17 14 19 22 21 19 22 11 11 11 12 12 17 10 11 9 9 8 8 8 8 8 9 9 14 18 13 9 7 6 6 8 6 8 11 9 9 9 9 9 8 10 10 9 9 11 21 17 18 15 12 12 15 8 8 8 8 10 9 11 11 15 7 9 9 9 9 11 10 12 13 11 14 11 8 8 10 11 11 14 11 11 8 10 8 8 8 8 8 8 9 8 8 8 8 8 8 8 12 8 11 9 11 11 16 13 15 10 10 9 10 8 8 8 6 7 7 8 8 8 6 7 6 6 8 8 8 8 6 6 6 6 11 11 12 11 10 10 13 11 10 10 11 11 14 12 9 8 8 8 8 8 8 8 8 6 6 6 10 10 13 10 11 9 8 8 8 10 11 11 12 13 9 8 8 8 8 8 16 16 17 17 13	Open. Hide. 8 13 8 8 8 8 9 12 8 8 8 8 13 13 24 22 24 20 20 25 30 26 28 31 26 23 23 12 9 9 11 9 13 10 9 9 10 13 15 19 13 12 19 23 22 10 10 10 22 22 25 25 12 6 6 6 6 7 7 17 11 11 11 11 9 9 10 12 19 19 27 33 33 33 33 33 33 33 33 43 41 37 37 37 31 27 34 28 26 26 19 19 15 16 16 11 13 24 23 24 37 30 30 30 28 25 25 22 26 39 39 37 30 21 21 21 21 18 30 30 32 37 32 29 29 37 37 37 37 42 42 33 33 33 33 33 33 43 43 43 43 43 39 39 35 35 39 39 48 48 48 48 43 32 21 14 18 16 19 19 43 42 48 43 47 47 26 26 17 14 13 28 34 25 25 28 43 43 57 48 48 48 48 48 48 41 41 39 37 37 37 37 29 25 18 13 23 12 17 19 41 41 50 50 50 36 36 38 38 50 53 53 53 50 50 59 57 48 48 48 48 48 59 59 59 43 41 30 30 28 43 43 54 57 57 54 54 54 54 44 44 26 21 15 15 18 22 30 44 57 57 57 57 57 68 68 59 68 59 57 48 48 48 48 48 54 54 57 59 59 59 59 57 57 57 59 59 68 59 59 59 54 48 48 57 48 48 48 59 59 59 59 59 59 57 50 50 50 50 47 59 59 59 59 46 32 23 22 10 10 8 8 8 10 12 9 9 10 10 14 26 37 36 37 42 48 48 47 47 57 57 57 57 57 48 48 48 57 57 59 57 57 48 48 57 57 57 57 59 59 43 42 39 30 30 30 30 43 42 47 47 43 43 43 43 46 48 43 43 43 57 59 59 43 41 39 43 44 57 57 57 68 57 57 57 59 59 59 59 59 48 48 48 48 48 54 57 57 59 59 59 43 43 50 57 57 68 68 57 57 59 59 48 43 43 50 50 52 52 52 59 59 59 59 47 35 35 43 59 59 57 57 57 57 54 57 57 59 59 57 57 57 59 59 57 57 57 57 38 39 57 57 59 59 59 59 35 35 57 59 59 59 59 57 57 57 57 57 57 57 52 43 43 43 43 52 57 57 57 57 57 57 57 54 54 54 57 57 59 59 59 59 50 43 39 39 43 43 42 38 37 37 43 43 28 35 38 50 50 57 57 44 32 32 20 15 15 32 32 44 32 32 32 32 23 28 28 42 59 59 44 44 40 40 37 44 42 42 42 36 28 30 30 37 37 39 44 46 42 39 35 35 35 39 44 44 44 28 28 25 28 29 37 39 48 44 47 43 43 43 43 43 48 42 42 30 30 32 32 35 43 42 48 48 47 34 32 20 20 23 31 32 32 27 21 16 12 12 15 19 19 14 22 16 19 16 16 19 18 33 32 34 34 28 28 35 37 37 37 37 29 28 17 17 10 10 11 11 12 19 18 24 16 18 10 12 15 15 10 13 12 9 8 8 8 8 10 14 21 13 12 10 12 10 10 12 16 12 12 14 17 17 22 23 23 19 15 12 12 11 12 12 12 12 12 11 13 13 13 13 13 15 13 12 10 12 12 12 10 15 12 8 8 8 8 8 8 8 8 8 8 9 11 16 15 8 8 8 8 8 10 12 14 15 14 15 13 6 6 6 8 8 11 13 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no439_m13.b1 MSMg01no439_m13.b1 CHROMAT_FILE:
MSMg01no439_m13.b1 PHD_FILE: MSMg01no439_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:00 2005
         (504 letters)



>mm_chrX_49868781_49869684
          Length = 904

 Score =  948 bits (490), Expect = 0.0
 Identities = 496/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcattccttgcaaagggaatgaatggtgagaaaatgtatcagctaagtaatcactt 66
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 207 gaattcattccttgcaaagggaatgaatggtgagaaaatgtatcagttaagtaatcactt 266

                                                                       
Query: 67  tttttattccaatattgattaccccccccttttataactcctcactgtgaattttctact 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttttattccaatattgattaccccccccttttataactcctcactgtgaattttctact 326

                                                                       
Query: 127 ccaccttttcatgactattgtccccactccctgccaagcgatattggaggaagtcatgag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccaccttttcatgactattgtccccactccctgccaagcgatattggaggaagtcatgag 386

                                                                       
Query: 187 tttttgccatttctgtagaataaaccagtcacccagcttaactttacccaagtcctggct 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttttgccatttctgtagaataaaccagtcacccagcttaactttacccaagtcctggct 446

                                                                       
Query: 247 gatatttcacgaggcctttagtcatactttgccactttcttccattatttatgctttccc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gatatttcacgaggcctttagtcatactttgccactttcttccattatttatgctttccc 506

                                                                       
Query: 307 tcactttaaattcttcctaaatatcccaagtcccaaatgcaatcctggcctccccaacct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcactttaaattcttcctaaatatcccaagtcccaaatgcaatcctggcctccccaacct 566

                                                                       
Query: 367 tagcaagtgagatgtctctgataagacagaagattttaagcatgcatttcctgggattcc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tagcaagtgagatgtctctgataagacagaagattttaagcatgcatttcctgggattcc 626

                                                                       
Query: 427 atgcatctttcttgacccaatctcccactcccttcctttcattgtcaaacgtatgacaag 486
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atgtatctttcttgacccaatctcccactcccttcctttcattgtcaaacgtatgacaag 686

                             
Query: 487 aggagtcagctctcactt 504
           ||||||||||||||||||
Sbjct: 687 aggagtcagctctcactt 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information