BAC Information

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BAC

Clone NameMSMg01-440D03
ChromosomeX (Build37)
Map Location 49,120,465 - 49,242,774
singlet/doubletdoublet
Overlap geneUsp26, LOC100040479, LOC665888
Upstream gene2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356, Hs6st2
Downstream gene1700080O16Rik, LOC100040495, Gpc4, Gpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440D03.T7 (MSMg01no440_d03.b1)MSMg01-440D03.TJ (MSMg01no440_d03.g1)
ACCAG530369AG530370
length743739
length of high quality
(start - end)
559 (53 - 611)532 (83 - 614)
definitionCHROMAT_FILE: MSMg01no440_d03.b1 PHD_FILE: MSMg01no440_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:33 2005CHROMAT_FILE: MSMg01no440_d03.g1 PHD_FILE: MSMg01no440_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,242,411 - 49,242,774)(49,120,465 - 49,120,682)
sequence
NNNNNTTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAACCTATATATAATAGATATGTTGCCAGCATGACTTAG
TGAAAAATTACTATATGCAGACCCTTTCATATTCTAGTTCATCATTCAGC
AAACACGGGACACAGCTGAGCCCACTGTACTGTCCAAACCTCAACTGTGA
TTCTGTCTTCTTTGTATTTTTTCTGATTTTGGCTAGGTCTCATATGGGCC
ATGCTGGTCTTGAACTCAGTATGGAGCAGGACTATGAACTTCTGACTCTC
CTGACTCTACTTCTTTGATTTGATTGTAAGCATTCACCATCATGCCTAGC
CTTTCTCCCTTCCCTTTCCCCTCTCTATTGCCCTCTCTCCCTCCTATCCT
CCCTCTATTGTTTGATTGTTTTTATTTGTTTTTGAACAAGCTCTCACAAT
GGAGCCCAGCCTGGGCTCAAAAATCACAATTCTTTGGCTTCAGCCTCCTG
AGTGTTGAGATTATAGGTCTGCCTTACCATGCTTGACACATATACCTCAG
CTTTATTACCTAGTACGTTTGTACAGAATATTACAAGATTACCAAGAGTG
AAATGAAATTAAAATGTGACAGTTTGTTGACAATTTGCTTCAGTTTTGCT
AGAACCTAAAATATATTGCTTTCAAAAAGACACTCAATTTGATTGGCTCC
ATGAAGCTCTAGTTTCAAATGGCTTCACAGCCCATTGAAAGAA
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGATACAGAGAA
TCCAAGGCTGCTAGTCAGTCTTGTGGGCAGTTAGTTTGGTATTAAAAAAC
ATATGATCTGAACAATAGTGAAGGTAATCAAGTTTCAGGGGCATCTGAAA
TAAGATTAGGAGTTGAAATTAATATTGAATTGAAAAAGCTTTAGGCCGGC
CAGTGGTGGCGCTCGCCTTTGATCCCAGCCCTTGGGAGGCAGATGCTGGT
GGATTTCTGATCTGAGTTCCAGGCCAGCCTGGTCTACAGAGTGAGTTCCA
GGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAG
TAGGATGTTGAAGTCTAAGTAAGGAAAACAAATGAGAAACAGGCAAAGAC
AGCCTGTGGTAATAAGAGTTAAGCCCATCCATTATTCTAATAATCTCCCT
TGGGTCAACGTCATCCTTGGAACATTTATGACCGCTAGAACAATTTTGAA
GAGTTAACATCTCATTCCAAATGAGTAGTGAGCAAGTTCTAGTTTTTATC
TAGCAGAACATAACATTCTTTACAAAGGGGTGTTTTCCCTTTCTTTATTT
AAACTTTCGTTGGTTGTGGTTTTTTTTATTTTTATAACTATAATTTTCCA
TTATATCACCTTTATGCTCATGTCTCTTTTATCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_d03.b1 MSMg01no440_d03.b1 CHROMAT_FILE:
MSMg01no440_d03.b1 PHD_FILE: MSMg01no440_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:33 2005
         (559 letters)



>mm_chrX_49242411_49243369
          Length = 959

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacctatatataatagatatgttgccagcatgacttagtgaaaaattactatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaattcaacctatatataatagatatgttgccagcatgacttagtgaaaaattactatat 305

                                                                       
Query: 65  gcagaccctttcatattctagttcatcattcagcaaacacgggacacagctgagcccact 124
           |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 304 gcagaccctttcatgttctagttcatcattcagcaaacacgggacatagctgagcccact 245

                                                                       
Query: 125 gtactgtccaaacctcaactgtgattctgtcttctttgtattttttctgattttggctag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtactgtccaaacctcaactgtgattctgtcttctttgtattttttctgattttggctag 185

                                                                       
Query: 185 gtctcatatgggccatgctggtcttgaactcagtatggagcaggactatgaacttctgac 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtcttatatgggccatgctggtcttgaactcagtatggagcaggactatgaacttctgac 125

                                                                       
Query: 245 tctcctgactctacttctttgatttgattgtaagcattcaccatcatgcctagcctttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tctcctgactctacttctttgatttgattgtaagcattcaccatcatgcctagcctttct 65

                                                                       
Query: 305 cccttccctttcccctctctattgccctctctccctcctatcctccctctattgtttgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  cccttccctttcccctctctattgccctctctccctcctatcctccctctattgtttgat 5

               
Query: 365 tgtt 368
           ||||
Sbjct: 4   tgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no440_d03.g1 MSMg01no440_d03.g1 CHROMAT_FILE:
MSMg01no440_d03.g1 PHD_FILE: MSMg01no440_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:33 2005
         (532 letters)



>mm_chrX_49119951_49120882
          Length = 932

 Score =  414 bits (214), Expect = e-120
 Identities = 217/218 (99%)
 Strand = Plus / Plus

                                                                       
Query: 315 aaagtaggatgttgaagtctaagtaaggaaaacaaatgagaaacaggcaaagacagcctg 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aaagtaggatgttgaagtctaagtaaggaaaacaaatgagaaacaggcaaagacagcctg 574

                                                                       
Query: 375 tggtaataagagttaagcccatccattattctaataatctcccttgggtcaacgtcatcc 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tggtaataagagttaagcccatccattattctaataatctcccttgggtcaacgtcatcc 634

                                                                       
Query: 435 ttggaacatttatgaccgctagaacaattttgaagagttaacatctcattccaaatgagt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttggaacatttatgaccgctagaacaattttgaagagttaacatctcattccaaatgagt 694

                                                 
Query: 495 agtgagcaagttctagtttttatctagcagaacataac 532
           ||||||||||||| ||||||||||||||||||||||||
Sbjct: 695 agtgagcaagttcaagtttttatctagcagaacataac 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)