BAC Information

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BAC

Clone NameMSMg01-442P10
ChromosomeX (Build37)
Map Location 62,749,049 - 62,749,453
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442P10.T7 (MSMg01no442_p10.b1)MSMg01-442P10.TJ (MSMg01no442_p10.g1)
ACCAG532483AG532484
length807765
length of high quality
(start - end)
405 (74 - 478)507 (80 - 586)
definitionCHROMAT_FILE: MSMg01no442_p10.b1 PHD_FILE: MSMg01no442_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:24 2005CHROMAT_FILE: MSMg01no442_p10.g1 PHD_FILE: MSMg01no442_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCAGAGGATC
CGCGGAATTCCATTTTCTGATAAGGTGTGCATGGGTGAATTGGATATCAA
TAAGAACTTATTCCTGGCATAAAGCAATTTATACTTTAGAAAACAAAGAG
TTGACAGTATGTCTGGAACAAGAATAAGAATAAAGTCTGCTCTACAAATC
AATTTTTGAGTTTAAGTATTCTAAGACATATTCTACAAGGATTTATACAT
GAAGAAATGGATCATGTTAATGCAAAGCATGCAATACTAAAAATTTCATG
CAATATTAAATACAAACATTCCAATAATAAAGCATTTCATATAATTTCCT
TGGTGATGTTTGGCAAAATTTTTCAATCTTTTTTAAATGTAAAAACACAT
GTGAACTCATCTTCCAGTAAGGTTGTCTCTAATGGTTTATCTAGNAGCTA
TTTCATTCCATAATATTTATAGAATGTAAGAATTACTAACAATTGGGAAT
AGATACATGTTTGGCCTTAATAAGCAAAATTGTCCAGTGTCACATAAAAT
TTTGGTGAAATGGCCCCCATTTCTTATTACCCCTACCGGGCCCCTTTTTT
AAATTTCATTTTCCTCCAAAAGTTTTTATCCCTCCTTTATATTAGCTTCT
CCTCCTCTTTAAATGGCGGCGCTTCTTTTTATTCCCCTATCTCTCCTTAC
TTATCTCCCTAACTCTTTTCCTTCCCCTTTGTCCTTTATTCCCCTTTTTA
TATTCTCAGTCCGCCTATTTTATCCCTCCTCCCCTCTCCTTTTCATTCTC
CCCCTCG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACACAATGAGAAGACCA
AACCTACAGATAATAGGAATAGATGAAAAGGAAGTTTTTTCAACTTAAAG
GGCCAGCAAATATCTTCAAAAAATTATAAAAGAAAACGTCCCAAACCTAC
AGAAAGAGATGCCCATGAACATACAAGAAGCTTAGAGAACTCCAAATATA
CAGGACCAGAAAATAAATTCCTCCCGACACATAATAATCAGAACAACAAA
TTCACTAAATAAAGACAGAATATTAAAAGCATTAAGGGGAAAAGTTCAAG
TAACTTATAAAGGCATGCCTATTAGAATTACACAATACTTCACACCAGAG
ACTATGAAAGTCAGAAGATCCTGGAGAGATGTTATACAGAAAATAAGAGA
ACACAAATGACAGGCCAGGCTACTATGCCCAGCACAACTTTCAATTACCA
TAGATGGAGAAACCAAAGTATTGCACAATAAAACCAAATTCACACACTAT
CTTTCCACTAATACACCCCTTNCAAGGATAATANCNGAAGAANAAAAAAC
AATAGAAGGATGGAAACACCCCCTACAAAAAGCAAGAAAGAATCCTTCAC
CACACCTAAAGAAGACAGCCCCAGAACAGAATGCCACTCTTACTCCCAAT
AATAGGGAACCCCCTAACCTTTCCTTTTTTTTCCTTTTTATAAGGGATTA
GGCACTTACCTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_p10.b1 MSMg01no442_p10.b1 CHROMAT_FILE:
MSMg01no442_p10.b1 PHD_FILE: MSMg01no442_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:24 2005
         (405 letters)



>mm_chrX_62748849_62749653
          Length = 805

 Score =  748 bits (387), Expect = 0.0
 Identities = 401/406 (98%), Gaps = 2/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgtgcatgggtgaattggatatcaataagaacttattcctggcataaagcaatttata 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ggtgtgcatgggtgaattggatatcaataagaacttattcctggaataaagcaatttata 260

                                                                       
Query: 61  ctttagaaaacaaagagttgacagtatgtctggaacaagaataagaataaagtctgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttagaaaacaaagagttgacagtatgtctggaacaagaataagaataaagtctgctct 320

                                                                       
Query: 121 acaaatcaatttttgagtttaagtattctaagacatattctacaaggatttataca-tga 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 321 acaaatcaatttttgagtttaagtattctaagacatattctacaaggatttatacaat-a 379

                                                                       
Query: 180 agaaatggatcatgttaatgcaaagcatgcaatactaaaaatttcatgcaatattaaata 239
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaatggatcatattaatgcaaagcatgcaatactaaaaatttcatgcaatattaaata 439

                                                                       
Query: 240 caaacattccaataataaagcatttcatataatttccttggtgatgtttggcaaaatttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caaacattccaataataaagcatttcatataatttccttggtgatgtttggcaaaatttt 499

                                                                       
Query: 300 tcaatcttttttaaatgtaaaaacacatgtgaactcatcttccagtaaggttgtctctaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcaatcttttttaaatgtaaaaacacatgtgaactcatcttccagtaaggttgtctctaa 559

                                                         
Query: 360 tggtttatctagnagctatttcattccataatatttatagaatgta 405
           |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 tggtttatctagtagctatttcattccataatatttatagaatgta 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)