CCCTTCCCCNCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGA
GGATCCGCGGAATTCCCAATCCTCCGGCCTCTAGCTCCCAAATGCCCAGA
GAACAACTCCAACTTTATTTTCTGAGTTCTGTACTTAGTCTCTCTATTCT
ATGGTGGAGGGGAAAGTGAAGAGAGCACAGTGGAATCTACAGATCTCGAA
GTCACAGAATTATGTTTTCTAATCAGGTAGACTGAATCAAAGGTCTTACA
CATGCTAGTCAAGGACTCTACCATTTGCAGCCCCAGACTAGAATCCTATT
TTCCCAACATTAATCAGCTATACATTTATTCAAAACACAGTCTCATAATG
GAAACACACCCAACACAGCTCCTCATTAACATGCTAAAGTGTAACATGGG
CTATTTTTAGAGCTAGCACCTAAGCCACTAGATAGCTAGTTAACCTGGGG
ATTTATTTATGACATTTTCAATCTTGATAACATGGTAACTATGAAAGTCA
AATAGTAAGTGTTCAAAATCTTCATAATACCTTTCAGCTATTCTGAANAG
GAAGACCTAGTTAAAAGGGGATTATCCTCTGCCCTTTTGTACCGATGAAT
CTAGTATTATAATAACAATAGCACCACTATTATCTATTAACACTCCCCGT
CTTTTTTTGTTTTCTCCGCTCGTATCAAGGAATAAAACTGGGCTTACCCT
CTTTTCTTTTTAAAAAAAAAAAAAAAAAA

TTTTTTACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGGCTATCATCCACTTT
AATTACATGTGCAAAATAGAATCTTGAAACTGAGGTTTAAATATATGGCT
TTAGATGAGTATTTATTCCATTGACAATTTTCTTAGCAATGTTCTCAATC
TACCCAAAATTGAAGGTGATTAAAAAGTAAGTTGGCAAAGAAGCATTCTG
AGAGGAATGTGAGACCCAAAATTAGTGTCCTAATGTAGTTGAAAATTGTT
TTTACTTTGGCGGGGGTGGGGGGATAGGTACCGTGGAATAACACTTCATC
GGTAGGAAGGAAGCAGGTCTGCCTTCTTCAGAAAAACGCTTTTCCCTATT
AGACTTTTCAGATATAACAACAATAACAACAACAACAACCATAACCCAAT
GTACAGTGACAGACTTGTAATCTCAGTCTTCAGAGACAAGAGGATTATGT
CAAGTTGAAGGCTAGTCTGATCCACATATTATCTTCCCGCCAGTCTGCGC
TATTGTGTGAGACCCCACCTCCCAATTTATTCTTGAAATATTCTCCAACA
CCGAACATAGTAATCTTCAAATGTCGTACAAGGCGCATGTTTGGGAACCT
ACTTTTTTTCTCGCTGTCCCCGCCTTTCTGTTCTCTTTTATTTCCCCCCC
TGTTCCCCCCTTATCATATAA

Query= MSMg01no443_n14.b1 MSMg01no443_n14.b1 CHROMAT_FILE:
MSMg01no443_n14.b1 PHD_FILE: MSMg01no443_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:34 2005
         (462 letters)



>mm_chrX_157297330_157298191
          Length = 862

 Score =  841 bits (435), Expect = 0.0
 Identities = 450/455 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcccaatcctccggcctctagctcccaaatgcccagagaacaactccaactttatt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcccaatcctccggcctctagctcccaaatgcccagagaacaactccaactttatt 267

                                                                       
Query: 68  ttctgagttctgtacttagtctctctattctatggtggaggggaaagtgaagagagcaca 127
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttctgagttccgtacttagtctctctattctatggtggaggggaaagtgaagagagcaca 327

                                                                       
Query: 128 gtggaatctacagatctcgaagtcacagaattatgttttctaatcaggtagactgaatca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtggaatctacagatctcgaagtcacagaattatgttttctaatcaggtagactgaatca 387

                                                                       
Query: 188 aaggtcttacacatgctagtcaaggactctaccatttgcagccccagactagaatcctat 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaggtcttacacatgctagtcaaggactctaccatttgcagccccagactagaatcctat 447

                                                                       
Query: 248 tttcccaacattaatcagctatacatttattcaaaacacagtctcataatggaaacacac 307
           |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||
Sbjct: 448 tttcccaacattaatcagctatacatttaaacaaaacacagcctcataatggaaacacac 507

                                                                       
Query: 308 ccaacacagctcctcattaacatgctaaagtgtaacatgggctatttttagagctagcac 367
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccaacacaactcctcattaacatgctaaagtgtaacatgggctatttttagagctagcac 567

                                                                       
Query: 368 ctaagccactagatagctagttaacctggggatttatttatgacattttcaatcttgata 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctaagccactagatagctagttaacctggggatttatttatgacattttcaatcttgata 627

                                              
Query: 428 acatggtaactatgaaagtcaaatagtaagtgttc 462
           |||||||||||||||||||||||||||||||||||
Sbjct: 628 acatggtaactatgaaagtcaaatagtaagtgttc 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no443_n14.g1 MSMg01no443_n14.g1 CHROMAT_FILE:
MSMg01no443_n14.g1 PHD_FILE: MSMg01no443_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:34 2005
         (342 letters)



>mm_chrX_157472716_157473457
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtggctatcatccactttaattacatgtgcaaaatagaatcttgaaactgaggtttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aagtggctatcatccactttaattacatgtgcaaaatagaatcttgaaactgaggtttaa 483

                                                                       
Query: 61  atatatggctttagatgagtatttattccattgacaattttcttagcaatgttctcaatc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atatatgactttagatgagtatttattccattgacaattttcttagcaatgttctcaatc 423

                                                                       
Query: 121 tacccaaaattgaaggtgattaaaaagtaagttggcaaagaagcattctgagaggaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tacccaaaattgaaggtgattaaaaagtaagttggcaaagaagcattctgagaggaatgt 363

                                                                       
Query: 181 gagacccaaaattagtgtcctaatgtagttgaaaattgtttttactttggcgggggtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gagacccaaaattagtgtcctaatgtagttgaaaattgtttttactttggcgggggtggg 303

                                                                       
Query: 241 gggataggtaccgtggaataacacttcatcggtaggaaggaagcaggtctgccttcttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 302 gggataggtaccgtggaataacacttcatcggtaggaaggaagcagggctgccttcttca 243

                                                     
Query: 301 gaaaaacgcttttccctattagacttttcagatataacaaca 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gaaaaacgcttttccctattagacttttcagatataacaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)