Query= MSMg01no444_i18.b1 MSMg01no444_i18.b1 CHROMAT_FILE:
MSMg01no444_i18.b1 PHD_FILE: MSMg01no444_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:28 2005
(524 letters)
>mm_chrX_41576877_41577804
Length = 928
Score = 965 bits (499), Expect = 0.0
Identities = 517/525 (98%), Gaps = 5/525 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgat-tttcatatcagaaagatattataggacttacaaaggagattcagaaa 63
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gaattctctgatatttaatatcagaaagatattataggacttacaaaggagattcagaag 833
Query: 64 gaagagtcaaatataagaatatataataatatataagtaatactatgtaatacatagtaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaagagtcaaatataagaatatataataatatataagtaatactatgtaatacatagtaa 773
Query: 124 tgtgtaagaatactacatagtaattaataataaatgaaataataggtcttaggatataac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tgtgtaagaatactacatagtaattaataataaatgaaataataggtcttaggatataac 713
Query: 184 ttggtagaatgccaatgtatcacacagtagtttctgaattctatctactgtacccactac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ttggtagaatgccaatgtatcacacagtagtttctgaattctatctactgtacccactac 653
Query: 244 cctcatctgaactattggtgacaaaaagttttctagaagttggtggccattgtctttgct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cctcatctgaactattggtgacaaaaagttttctagaagttggtggccattgtctttgct 593
Query: 304 tttgttcctctgatgagcacaccaaattctatgagctgtagaacacagaatttaaaggaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tttgttcctctgatgagcacaccaaattctatgagctgtagaacacagaatttaaaggaa 533
Query: 364 gacatgaatat----aaggtgtttgtaggaaggataatgttgacagagggagaggaatat 419
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gacatgaatataacaaaggtgtttgtaggaaggataatgttgacagagggagaggaatat 473
Query: 420 gagacagtagactgagcctaattgtaatgtattatgtatttgtatgacaatgtcaaataa 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 472 gagacagtagactgagcctaattgtaatgcattatgtatttgtatgacaatgtcaaataa 413
Query: 480 caaaattgatgaaaataataggacatcttaacatcttaaaaaatt 524
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 caaaattgatgaaaataataggacatcttaacatcttaaaaaatt 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 928
Length adjustment: 10
Effective length of query: 514
Effective length of database: 918
Effective search space: 471852
Effective search space used: 471852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_i18.g1 MSMg01no444_i18.g1 CHROMAT_FILE:
MSMg01no444_i18.g1 PHD_FILE: MSMg01no444_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:28 2005
(596 letters)
>mm_chrX_41438627_41439622
Length = 996
Score = 1116 bits (577), Expect = 0.0
Identities = 591/596 (99%)
Strand = Plus / Plus
Query: 1 cattctgtattaaatacacctagaaaaactaaattaatgagcagttatctgtactactat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 cattctgtattaaatacacctagaaaaactaaattaatgagcagttatctgtactattat 260
Query: 61 gcagagtttgtaatatagtttgacatataatgtagaaatgttacaaaaattgcttggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagagtttgtaatatagtttgacatataatgtagaaatgttacaaaaattgcttggaac 320
Query: 121 aaaacctatgggacatagtagataatttggagatagtaaaatgattattttaaatcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacctatgggacatagtagataatttggagatagtaaaatgattattttaaatcaaga 380
Query: 181 actttaaccagagaacaaatatgtatatgctgatgaattatttcatactgaatatagcca 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 actttaaccagagaacaaatatgtatatgctgatgaatgatttcatactgaatatagcca 440
Query: 241 atcttttttacttggagtcaatgaacacttcaaagtttaatcttctagaaagtagcttag 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaattttacttggagtcaatgaacacttcaaagtttaatcttctagaaagtagcttag 500
Query: 301 acttctgctcatttatatttcagaaatatcattgttctggaattagctattttggaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttctgctcatttatatttcagaaatatcattgttctggaattagctattttggaaatg 560
Query: 361 cagatcattactgcagatatggaaactgggttctgaaaagatcagaatgaactgtactgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagatcattactgcagatatggaaactgggttctgaaaagatcagaatgaactgtactgt 620
Query: 421 ggattttttggaatccccatgtaagacatttttctttatttttatttaactgtaaaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggattttttggaatccccatgtaagacatttttctttatttttatttaactgtaaaattt 680
Query: 481 ccctgcaagtagtgtcgttaaaaatgaggaaagttcttgaatacatttaagaataaacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctgcaagtagtgtcgttaaaaatgaggaaagttcttgaatacatttaagaataaacaa 740
Query: 541 ataatctgttatctcatggagcanagggttatgttagacccaaagatataaagatg 596
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 ataatctgttatctcatggagcaaagggttatgttagacccaaagatataaagatg 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
