BAC Information

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BAC

Clone NameMSMg01-445F10
ChromosomeX (Build37)
Map Location 128,013,481 - 128,013,660
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665773, LOC665799, LOC670449
Downstream geneLOC245600, EG631264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445F10.T7 (MSMg01no445_f10.b1)MSMg01-445F10.TJ (MSMg01no445_f10.g1)
ACCAG534293AG534294
length738768
length of high quality
(start - end)
---180 (322 - 501)
definitionCHROMAT_FILE: MSMg01no445_f10.b1 PHD_FILE: MSMg01no445_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:30 2005CHROMAT_FILE: MSMg01no445_f10.g1 PHD_FILE: MSMg01no445_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTCTTCTCGTCAGAGCCCCATGTCTTTAGGTCTTTAATGGATAAAGCT
CAAGGCCGCATAACCAGATGCCATAAATGAGTAGGCATTATATTCCCACC
ATCTGATTTACAAATCAGAATGATTGTTATCCTTTGTCTTGAAGAATGAT
ACTAGCACATTGTCTTGGACTGCTGACCAGGCCAGTTTCTGGAACAGCCT
AATTCCCAGCCGATTATTTTTCTTTATGATCACATGGCTACATTTTAGTT
GGATATGGCAAGATTACTCTGATTTTCATTTTGAAATGTTGACTGCAAAG
AGGTTTTATTTTCCTGTGACAGTATATGATTTGATCATTAATACCCAAGG
CTGCTAATAATGGAGACAGGCTTTGAGATGAAGATATAGGGCATGTATCT
AGATACTATCCGACTGCTTTAATCATATACATTATATTATATAACCATGG
ATGACTACTATGCATAGGTTTATGATAAATGAACAAGAAAATATTCACAC
TAACCTGCGTAACTCTATGATACCATTTCTGCACGTTAGGCATTTTATGT
ACCTCATTTTAGAATATCGAAACTTACCACCGAAGCCTATTGTTTTTCCC
CAAGTGTTCTAATAATTAGCCGCCCATTACGAACTTAACCTGTATTTCTC
TGTGTGTACCCACCCCACAACTTTCCCCGGCCCGCCGN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCTACTTTGGCTACTTAATCCATCACCT
CCTCATGTTCTTTGGCGGATAGCTAAGATCCTTGAATAAAAGCGATATGC
TGTAGATCTCCACACTGTAATAATGGTAAATACTATGAAAACGTGTAAAT
GACTCATCACAGTTGCTTCTTCTTATAGATTTCAGAGGATAGGAAGATGT
AGGCAGCAGGGTTTCACTAAGACACATAAAGGTGACATCATTTCCCTCTA
GTAAACATGGGATTTAGTTATTTTGTTTTTATTGATTTTTCCTTCATTCT
TTACGTCTACTCTTATTCATGATTTTTGCTCAAAAGAATACTATCTGAGG
TGTAGCTCTGACTCTAAGTGGAGCAATGCCATTTTANACTGCCTAAAATA
TAAAATTACAAAATTACTCTTGTCCTCTCCCTTAAGTGATAATCCTACTA
GGCTGGTCAGTCAACTATCAAGATGCCACTTCCCACGGAAATCCGAATCA
ATGAAATATATGACTATGACTGTAGTAAGAATATCTTTCCCCCTCATAAT
ATAAGGTACTTATATACAAAAAAGTCCCTCTTGTTGCTGCCATTTTTTTT
TTTTCCCTCCTGTGAAGCCCGGCCCCAATTGCCTGGTCTACTCCTCTTGA
CATTCTTATCTTATATTTTTTTTTTCCCCTCTTTTCTTTTATTCTCCCAG
AGTATTTCCCTCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_f10.g1 MSMg01no445_f10.g1 CHROMAT_FILE:
MSMg01no445_f10.g1 PHD_FILE: MSMg01no445_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:30 2005
         (180 letters)



>mm_chrX_128013281_128013860
          Length = 580

 Score =  327 bits (169), Expect = 3e-94
 Identities = 177/180 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttttattgatttttccttcattctttacgtctactcttattcatgatttttgctc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgtttttattgattttttcttcattctttacgtctactcttattcatgatttttgctc 321

                                                                       
Query: 61  aaaagaatactatctgaggtgtagctctgactctaagtggagcaatgccattttanactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 aaaagaatactatctgaggtgtagctctgactctaagtggagcaatgccattttaaactg 261

                                                                       
Query: 121 cctaaaatataaaattacaaaattactcttgtcctctcccttaagtgataatcctactag 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 260 cctaaaatataaaattacaaaattactcttgtcctctcccttaagtgttaatcctactag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)