Query= MSMg01no448_j14.b1 MSMg01no448_j14.b1 CHROMAT_FILE:
MSMg01no448_j14.b1 PHD_FILE: MSMg01no448_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:56 2005
(241 letters)
>mm_chrX_11840926_11841567
Length = 642
Score = 406 bits (210), Expect = e-118
Identities = 234/242 (96%), Gaps = 1/242 (0%)
Strand = Plus / Minus
Query: 1 ggcg-aaagaaccaccctctgcaaattgtctttacacttccactggaccactggtgtttg 59
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggcgaaaagaaccatcctctgcaaattgtctttacacttccactggaccactggtgtttg 383
Query: 60 tattttgtgacccccaagcccaccccgaatagtcacaaaaccctacatgacatcataagc 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 382 tattttgtgacccccaagcccaccccgaatagtcacaaaaccctacatgacgtcataagc 323
Query: 120 cgcagctttcgaaaccagattctaggagatcctgaccacagcacatatcagacactcatg 179
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 322 cgcagctttcgaaaccagattctaggagatcctgaccacagcacataccagacactcagg 263
Query: 180 cctctgcagctgctccagtgtcctccacagccagcatcaagctgcaggccccgaggctat 239
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct: 262 cctctgcagctgctccagtgtcctcaacagccagcatcaagctgcgggccccgagtctat 203
Query: 240 gc 241
||
Sbjct: 202 gc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space: 146856
Effective search space used: 146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no448_j14.g1 MSMg01no448_j14.g1 CHROMAT_FILE:
MSMg01no448_j14.g1 PHD_FILE: MSMg01no448_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:56 2005
(473 letters)
>mm_chrX_11694710_11695581
Length = 872
Score = 891 bits (461), Expect = 0.0
Identities = 470/473 (99%), Gaps = 1/473 (0%)
Strand = Plus / Plus
Query: 1 cttttagccaatgaaacgtaagcaaaagaaacaatggcaagtcctgagtgggagacttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttagccaatgaaacgtaagcaaaagaaacaatggcaagtcctgagtgggagacttcc 260
Query: 61 cgagccattttgttcttctttgctcttgcaatttttgccatggccctaactggcccactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgagccattttgttcttctttgctcttgcaatttttgccatggccctaactggcccactc 320
Query: 121 gtccctggagagtgaaaggcacatggagctaatttggacccagctcctacttatgatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccctggagagtgaaaggcacatggagctaatttggacccagctcctacttatgatcaa 380
Query: 181 gcctctgctcagcaaccaaacccacgtgaccaacagatgcatcccccaaaatgaattgct 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gcctctgctcagcaaccaaacccacgtgaccaacagacgcatcccccaaaatgaattgct 440
Query: 241 gctctgtgctttgggtggtttcttacacagctttctttcagcaagagctgactgagaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctctgtgctttgggtggtttcttacacagctttctttcagcaagagctgactgagaaca 500
Query: 301 ccacctaagtatattccttggcctacccaagactcacaatgcactctctacattctttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacctaagtatattccttggcctacccaagactcacaatgcactctctacattctttct 560
Query: 361 agaaggattttttttctttttagaataatatatggttttcaatatactagctctctttat 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaggattttttt-ctttttagaataatatatggttttcaatatactagctctctttat 619
Query: 421 tcccttgcccttcttatttttttaatttagcacaactcaccgtattttctttt 473
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 620 tcccttgcccttcttatttttttaatttagcacaactcacagtattttctttt 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
