BAC Information

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BAC

Clone NameMSMg01-449K11
ChromosomeX (Build37)
Map Location 65,308,350 - 65,308,591
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666828, Gm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194
Downstream geneEG236844, LOC385372, LOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449K11.T7 (MSMg01no449_k11.b1)MSMg01-449K11.TJ (MSMg01no449_k11.g1)
ACCAG537573AG537574
length727730
length of high quality
(start - end)
242 (84 - 325)100 (211 - 310)
definitionCHROMAT_FILE: MSMg01no449_k11.b1 PHD_FILE: MSMg01no449_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:20 2005CHROMAT_FILE: MSMg01no449_k11.g1 PHD_FILE: MSMg01no449_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAGTACGGC
GGCGGNAANCATCTGAGTTTCCCAAAAAAGTTCAGGATAAAATGAATACC
GCATGATAGATTTCTCTGTTGCACTTATACCTTTTATATTATAGTGGTAT
ACCAGGACAAATAAAATAATTTTTTATTTAATACATGTATCATGAAAATC
TAAAGATTTGAATATTGATTTGAATATTGATTCAATAATATCTTTTAACT
TTATGTTATTTTGTGCTTAAATAGAAATACAGAAGTTTAATGATATTCCT
TAGTCCTATTATATCTATCTATCTATCNATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATCTACCTACCTACCATCTATTTACCTACATC
CCAAAAACTGCCCCTTCCTAGCCCCCCCTCAGAGAATTCCTCACATCATC
TCCCCTCCTCTTCTCCTCTGAGAGGATGGGATACCTCTAGACATCCCCCA
ACCCTGTAGCATCAAGTCTCTGCAGGATAAGATGCATCCTCTTCCACTGA
GGCCAGACAAGGCAGCCTTTTTGGAGAAAGGATTCCATGGTCAGGCTACA
GCTTTAGGGAACTCCCCCACTACAGTTGTTGCCGCATCCTCATATAGACT
GAGCTACTTATTTGATATATTTTTCTTCCTAGGGAACTTTTCCCAATCTT
CCGCATGGCTCTTTTGCTTGGTGGCTN
AAAACACGATGCAGTGGTAGCCTGGNGGNCGCCTGTTTCCGACGTGAGGN
GAACNANAGAAGTTACGNGACCGGCGGCGGCANCNNNGGAGGNNCCNGGN
CNCAAAAAGGNCAGGGATTCCCCANAAAANANGCNANNNNNAGNCNGGNN
NNANNNCNTTCTTTGGCCCGACAGGNNCNNGGGNNNCNAGCNNANGGNNN
NNGAGNNNCNTGACTGTAGAGATGAATGATCTCTGCATCTACACTTGTTT
CTTGTTCATTTACTTGGGATCTTTGCCTTCCATCTCTTTATATTTATTAT
ACTATATAANATTTTCTTTTTTTCTGANNGNNNNCNAAAGGGANACAGGA
AGAGGGGTAGACCCAGCGCAGAGAAGAGGGGGGGGGAANGGAGGAAGAGA
AGCCGCAANCAGGACAAGCAACGCGAGAAGAAAACCNANNCCAAAAAAAC
CGGAAAAACACAAAGGGAAAAACCCCCCCCNCCAAAAGAGAGCNAAACAG
CCCCCGGCGCAGAAGCCCCAGAACAACGCGGNGAAAGACCGGGAAGCCAC
AGACCGCNAAAAAAACCCGGACCCACCCACACACCGAAGCCCGCACCCCA
CACAGGGCGAGAAAACAAACCAAACCCCGAACAACGAACACACCACCCAC
GAATAATTTTTTATTCCCAGCACCAATGTTCAAGAAACTTCAGATTATTT
TCCCCCTTCGGCCTGGACAATTTCAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_k11.b1 MSMg01no449_k11.b1 CHROMAT_FILE:
MSMg01no449_k11.b1 PHD_FILE: MSMg01no449_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:20 2005
         (242 letters)



>mm_chrX_65308050_65308691
          Length = 642

 Score =  422 bits (218), Expect = e-122
 Identities = 236/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggataaaatgaataccgcatgatagatttctctgttgcacttataccttttatattata 60
           ||||||||||||||||||||||||||||||||||||||||| ||||  ||| ||||||||
Sbjct: 542 aggataaaatgaataccgcatgatagatttctctgttgcacatataaatttcatattata 483

                                                                       
Query: 61  gtggtataccaggacaaataaaataattttttatttaatacatgtatcatgaaaatctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtggtataccaggacaaataaaataattttttatttaatacatgtatcatgaaaatctaa 423

                                                                       
Query: 121 agatttgaatattgatttgaatattgattcaataatatcttttaactttatgttattttg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agattttaatattgatttgaatattgattcaataatatcttttaactttatgttattttg 363

                                                                       
Query: 181 tgcttaaatagaaatacagaagtttaatgatattccttagtcctattatatctatctatc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 362 tgcttaaatagaaatacagaagtttaatgatattccttagtccaattatatctatctatc 303

             
Query: 241 ta 242
           ||
Sbjct: 302 ta 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)