BAC Information

Click to search

BAC

Clone NameMSMg01-451D20
ChromosomeX (Build37)
Map Location 53,878,893 - 53,879,506
singlet/doubletsinglet
Overlap geneSlc9a6
Upstream geneLOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32
Downstream geneLOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451D20.T7 (MSMg01no451_d20.b1)MSMg01-451D20.TJ (MSMg01no451_d20.g1)
ACCAG538777AG538778
length748748
length of high quality
(start - end)		614 (63 - 676)601 (77 - 677)
definitionCHROMAT_FILE: MSMg01no451_d20.b1 PHD_FILE: MSMg01no451_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:25 2005CHROMAT_FILE: MSMg01no451_d20.g1 PHD_FILE: MSMg01no451_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTAAAGATTACCTGAGGACACCGACTTCAATTGTGCCCTATGACAATT
AAAGAGGATGATTAACTTACAAGGGCAAAGGGTGAACTAGTACAAACCTC
TACCAAATCCTAACTACTAATAAAAGAAGACTTTGACTCCTCAGGTTCTC
CGTCTTTAGGGGATAGAGACAGAGGCCAGTGGCACAGCACTTGCCTACCA
CAAGCAAAGCTCCCAACACCAAACAAGTAAAACCCTTAAAAAGCCCTTAA
GTTGGTTCCTATGCTGGCTTTCTTCTCAGCTACTTTTATGACCACATGTT
AACGTTATAAGCTAATAGGTTTCACTATGATGTTTTCATCCATCTATACA
ATGAACATTGACCCTATTCAGCCTACTACCATTCCTGATCTCACTAATCA
GCTGGTGCCCTCTCTCTTGCCAAATAGTTACCTGTCTACTTCCATGTTTT
GATTTCTTTTGTTATTTTTGGCTTTGCATGCAAAAGGAAATATGTGCAAT
TTGTCATTCTAGTTTGGCTTACTTCAGTTAATGTGATTTCCAGTTATACC
CATACTTCTGGAAATGACATAACTCCATTCTTTATGAATAACAAAACTCC
ATGGTATATATGTATGCATCAATGTGTGTGTGTATGTGTGTGTATATGTA
TGTATGATGANGTAAAATGGATGGAAGGNAANAAATGNAANNNNNNNN

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTACTTTTGCCTCCCAAGTAA
TGTTATTTAAGGCATGAGCCACCATGCCCAGCTAGTTACTAACTTTCAAG
AGCTGAAATAATGGCCAGAGAGGCAGTAGGCAGAGATGCGTGCCTCTAAG
CTTGGCGACCTGAGTTTGACTCCTGAGATTCACCTGGTGGAAAAAGAAAA
CCAACTCTCATAAGGCCTTACATTTATCAGTGCTTGAACTCGTGGCTTTA
GGGTTTCTTCACAGATGTCTTCTGGTTCTGATGGGTGTGCCATTGTGTGT
GACTTGGTGCCTCTGCCATGTATTTTTCCATAATGCTTCCAGTATTTTTC
TTTCGTTCTGTTCCCTCCACATTTGAACCTCAAGATGACATGTAAAGGTG
GTTTTCTGGTCTTGTCTTCTTGGGATTATAAATTCCTCCTATACTTACAT
AGCTACATCTTTTCCCCAAGGTTTGGGGAAATTTCTGCTGGACTTTCACA
AAATAGAGTTTATGTGGTTAGACTAACTTGGTTCCTTTTTTAATCAAAGA
GTTCATAGGAATAGTCTCTTTAAAAATGTTTATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATGGGTGGTGTGGATGTTTTACCTGCATG
TACTTATGTGCATCANGTGTATGCCTGCACAGAGGTAAGAAGACTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_d20.b1 MSMg01no451_d20.b1 CHROMAT_FILE:
MSMg01no451_d20.b1 PHD_FILE: MSMg01no451_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:25 2005
         (614 letters)



>mm_chrX_53878831_53879844
          Length = 1014

 Score = 1156 bits (598), Expect = 0.0
 Identities = 610/614 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgaggacaccgacttcaattgtgccctatgacaattaaagaggatgattaacttacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cctgaggacaccgacttcaattgtgccctatgacaattaaagaggatgattaacttacaa 617

                                                                       
Query: 61  gggcaaagggtgaactagtacaaacctctaccaaatcctaactactaataaaagaagact 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 616 gggcaaagggtgaactagtacagacctctaccaaatcctaactactaataaaagaaggct 557

                                                                       
Query: 121 ttgactcctcaggttctccgtctttaggggatagagacagaggccagtggcacagcactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttgactcctcaggttctccgtctttaggggatagagacagaggccagtggcacagcactt 497

                                                                       
Query: 181 gcctaccacaagcaaagctcccaacaccaaacaagtaaaacccttaaaaagcccttaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcctaccacaagcaaagctcccaacaccaaacaagtaaaacccttaaaaagcccttaagt 437

                                                                       
Query: 241 tggttcctatgctggctttcttctcagctacttttatgaccacatgttaacgttataagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 436 tggttcctatgctggctttcttctcagctacttttatgaccacatgttaacgtcataagc 377

                                                                       
Query: 301 taataggtttcactatgatgttttcatccatctatacaatgaacattgaccctattcagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 taataggtttcactatgatgttttcatccatctatacaatgaacattgaccctattcagc 317

                                                                       
Query: 361 ctactaccattcctgatctcactaatcagctggtgccctctctcttgccaaatagttacc 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctactaccattcctgatctccctaatcagctggtgccctctctcttgccaaatagttacc 257

                                                                       
Query: 421 tgtctacttccatgttttgatttcttttgttatttttggctttgcatgcaaaaggaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgtctacttccatgttttgatttcttttgttatttttggctttgcatgcaaaaggaaata 197

                                                                       
Query: 481 tgtgcaatttgtcattctagtttggcttacttcagttaatgtgatttccagttataccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgtgcaatttgtcattctagtttggcttacttcagttaatgtgatttccagttataccca 137

                                                                       
Query: 541 tacttctggaaatgacataactccattctttatgaataacaaaactccatggtatatatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tacttctggaaatgacataactccattctttatgaataacaaaactccatggtatatatg 77

                         
Query: 601 tatgcatcaatgtg 614
           ||||||||||||||
Sbjct: 76  tatgcatcaatgtg 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |