BAC Information

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BAC

Clone NameMSMg01-451H08
ChromosomeX (Build37)
Map Location 55,195,845 - 55,370,731
singlet/doubletdoublet
Overlap geneZic3
Upstream geneGpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447
Downstream geneLOC631581, LOC631621, 4930550L24Rik, Fgf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451H08.T7 (MSMg01no451_h08.b1)MSMg01-451H08.TJ (MSMg01no451_h08.g1)
ACCAG538942AG538943
length737713
length of high quality
(start - end)		334 (74 - 407)298 (84 - 381)
definitionCHROMAT_FILE: MSMg01no451_h08.b1 PHD_FILE: MSMg01no451_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:43 2005CHROMAT_FILE: MSMg01no451_h08.g1 PHD_FILE: MSMg01no451_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,195,845 - 55,196,178)(55,370,434 - 55,370,731)
sequence
TTTTTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAACGTTTCAAATAAAGTGGAAACAAACAAACAAACAAA
GCAAGTCAAATCCCAAGCTCCCCTCTCCCTGCACACCCTTTATCTAAGCC
TAAGAAGTAGAGTCTACAGAGTTCAGTTTCCAAGGTATTGCCCAATGAGG
GTGGAGTCATGTACAGTGCATAGGGCTCCACAAGGCCACTTGAGTCTCAG
TGGAGTTGTGCTCTTGAAGGAGGATTCTCAGGGATTGTACAGTTGGCAGT
CCTTGTTGAAAATCTGGAACAAAAATCCAACAAACGTAGTTCTTCACTGA
GTAGGACACCTGAAAGACCAACGTCTGGGATCCCCTCTTTCCCCCTACCT
CCCTCCTCCCCTCTGTCCTTTCCCCTCCCTTCCNTCTCTTCCTTCCTTTT
TTTTCCTTTCCAGGGGAAAAACTTATTTTTAAACCCCCCGGGGGAGTGTT
TTTTTTTTNNTNNTTTNTTTTTTTTTCTCATTTTTTTTTTTGCTCCCTCT
TTTTTTTTTTTTCCATTCTCCTTTTTTTTTTTTTTACCTCTCTTTTAATC
TTATTTATCTCCACTCCTCTATCTATATATTATACTTCCCTAAATGATAT
CCGTATGTTTATCCGTTCTTCCTTCTCATTTATTCTCCCTTCCTTTTCCA
CATTTTTGAAATCTATTTCTCACTCTTATTTTACTTT

TTTTTTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGACAGGGCTAAA
AGAGTTCATAGGCATGAAACATGGCTGAAAAAAAGCCCATAGTGGCGAAT
TAAAAGGAAGCTAATTTGGGGCCAGCAACCTGCAGCCATGTCTGTTTTTA
AATAGGAAAGAGGGACAAGAGAGGAACGGTTTTCTGTGTTTTGTTTTGGA
GAGAAGAATTTCAAAATAACAAAACAAAACAATCTTGATCCATAGAAATG
TCTATCTTAATGCTGTTTGCTTCAAGGTCTAGTAGTTGGCCTTGGGAATC
TTGACATTAAGGTCACTTGTGGTTGTGTTGTTACACACCCTATGATCTTT
AACACTTAGAAANAACTGGAAGCTTAAAAGGTTTATGAAAANNNNNTNNN
NTTNTTTTATTATTTTCCTGTTTTTATTTTTCTCCCTTTCTCACCCTTTT
TTTATATTTTCTCTACACCTACGTTCTTCTACACCTCACTATTATTTCTA
CTCTCCCTTCCTCTTCTTTTTCATCCTCATACTTTCGGTCTTCACTTTCT
ATTATTTCCCCCTACTTCCTTTATATAACTTACCACATATATACTTACAA
TTTCATCTTAATATTAACTTTTATCCCCCTTATTTTAAATTTATATTTCC
TTCTATTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_h08.b1 MSMg01no451_h08.b1 CHROMAT_FILE:
MSMg01no451_h08.b1 PHD_FILE: MSMg01no451_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:43 2005
         (334 letters)



>mm_chrX_55195645_55196378
          Length = 734

 Score =  607 bits (314), Expect = e-178
 Identities = 329/334 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagtggaaacaaacaaacaaacaaagcaagtcaaatcccaagctcccctctccctgca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 taaagtggaaacaaacaaacaaacaaagcaagtcaaatcccaaggtcccctctccctgca 260

                                                                       
Query: 61  caccctttatctaagcctaagaagtagagtctacagagttcagtttccaaggtattgccc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccctttgtctaagcctaagaagtagagtctacagagttcagtttccaaggtattgccc 320

                                                                       
Query: 121 aatgagggtggagtcatgtacagtgcatagggctccacaaggccacttgagtctcagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgagggtggagtcatgtacagtgcatagggctccacaaggccacttgagtctcagtgg 380

                                                                       
Query: 181 agttgtgctcttgaaggaggattctcagggattgtacagttggcagtccttgttgaaaat 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 381 agttgtgctcttgaaggaggattctcagggattgtacagttagcagtccttgttgaaagt 440

                                                                       
Query: 241 ctggaacaaaaatccaacaaacgtagttcttcactgagtaggacacctgaaagaccaacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ctggaacaaaaatccaacaaacgtagttcttcactgagtaggacacctgaaagaccaact 500

                                             
Query: 301 tctgggatcccctctttccccctacctccctcct 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgggatcccctctttccccctacctccctcct 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_h08.g1 MSMg01no451_h08.g1 CHROMAT_FILE:
MSMg01no451_h08.g1 PHD_FILE: MSMg01no451_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:43 2005
         (298 letters)



>mm_chrX_55370333_55371030
          Length = 698

 Score =  576 bits (298), Expect = e-169
 Identities = 298/298 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgacagggctaaaagagttcataggcatgaaacatggctgaaaaaaagcccatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caaatgacagggctaaaagagttcataggcatgaaacatggctgaaaaaaagcccatagt 340

                                                                       
Query: 61  ggcgaattaaaaggaagctaatttggggccagcaacctgcagccatgtctgtttttaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggcgaattaaaaggaagctaatttggggccagcaacctgcagccatgtctgtttttaaat 280

                                                                       
Query: 121 aggaaagagggacaagagaggaacggttttctgtgttttgttttggagagaagaatttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aggaaagagggacaagagaggaacggttttctgtgttttgttttggagagaagaatttca 220

                                                                       
Query: 181 aaataacaaaacaaaacaatcttgatccatagaaatgtctatcttaatgctgtttgcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aaataacaaaacaaaacaatcttgatccatagaaatgtctatcttaatgctgtttgcttc 160

                                                                     
Query: 241 aaggtctagtagttggccttgggaatcttgacattaaggtcacttgtggttgtgttgt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aaggtctagtagttggccttgggaatcttgacattaaggtcacttgtggttgtgttgt 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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