BAC Information

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BAC

Clone NameMSMg01-451H10
ChromosomeX (Build37)
Map Location 57,867,798 - 57,868,465
singlet/doubletsinglet
Overlap genenone
Upstream geneF9, EG434782, Mcf2, Atp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1
Downstream geneEG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159, EG631990, LOC632000, LOC100039759, EG245440, LOC100039778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451H10.T7 (MSMg01no451_h10.b1)MSMg01-451H10.TJ (MSMg01no451_h10.g1)
ACCAG538946AG538947
length761750
length of high quality
(start - end)
702 (48 - 749)668 (77 - 744)
definitionCHROMAT_FILE: MSMg01no451_h10.b1 PHD_FILE: MSMg01no451_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:43 2005CHROMAT_FILE: MSMg01no451_h10.g1 PHD_FILE: MSMg01no451_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGAGTTCACAAAAACATTGAGGAAGACTCAAATTGAAATGA
AGATATATTGAAAAACATGATAATTCAACTAGAAGAAAAAGCCTTACAAG
TAGAATGAATTGAGCAGAAGATTGACTATCAGGACTCAAAGATAAAGAGG
ATCTGGACCAAATAAGCAAATAATATTAAAAAAATTAAAACCACACACAT
GAAAGGACCATAAAAGAAATACATACCATGAAAAAAAATCCCAAATATTC
ACATTAAATGTATAAATGTAGAAGGATCCCAAGCCAATGGCATAAACCAC
ACCTTCAACAAGATCTCAGAAGAACCCCCCAAACTACAAAAAAGCACATT
TATAGGAATACAAAGAAACACACTTACTATTAAAGAAAGATGCCAGAACT
GTACACTAGATAAAAGATGGCATTTTCAACAAATGGTGCTGGAAAAACTG
GATGTTCACATATAGGAAAATGAAATGAGTCCTGTATCTATCATGTGACA
CAAATCTATTCACAAATGGATCAAAGAACTAAACCTGAAACTCCAACATT
AAAACTGCTAGAAGAACACATAGGCAGCAATCCACCTGATATGGCAAGTT
ACTATGAATGATAAGAAATTTCTGAAGAGGATTCCATGTGACAATGAATT
AAGCCCAACAATTGACATGGGACTTTCAAAAATTAAAAAGCTTCTGCATA
GCAAAAGAAAC
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATCCTAGGAGACTAAGATAATG
ATTCTGGAGTAAGCTTAATACCCCTGAGGTTGGAATTGACACCGAAAGAC
GAAAAGTTCAAAACACTTTGTGTTTCCTCAGTTCATTCATGCATACATGT
GCAGACTCAGAAGAGATGGAGAGCTGCGAGAAAATAGGTTAAATGCCGTA
AGACATTCTAATGAGTGACCAAGATCATTGAAAATGGTAAGGAGAGGTAT
GTAATCAAGCAAATGAAGGCTCAGCGGCTTGGAGGGCTGACTGCTTGATT
TGTCATGTAAATGCGTACACTGTAAAGGTAGGAGGGGATGGTTTGGATAA
TTAAGGATTTGAGGTATGAAAAGATGACTGATACTGCTCATAGCCAAGTC
TAGGTATAGGTGATTAGAACGGATCTCACGATCTCTGAAACACAGAAGCA
TTCTTGAGTGCCTTCGTGTTATCACTGAACATGCTGTAAATGCAGTCAGT
AGCTCTATACTTCACAGTCCCTTTCCTCCCAGAATGCAGGCTGTTCCTGT
GACTTATTTTGACCAAGAGAAAGAGGATGATGTTGTGGTGTAAGGTTTTG
CATGTTGATCTGAGGGCCTGGCATTTTTTGCTTCATGTTTTTTGGGATGC
TGTCATCTATCTCATATTGCAAGCCAACCATAAACAAAATAGACACCCCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_h10.g1 MSMg01no451_h10.g1 CHROMAT_FILE:
MSMg01no451_h10.g1 PHD_FILE: MSMg01no451_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:43 2005
         (668 letters)



>mm_chrX_57867598_57868665
          Length = 1068

 Score = 1253 bits (648), Expect = 0.0
 Identities = 663/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcctaggagactaagataatgattctggagtaagcttaatacccctgaggttggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatcctaggagactaagataatgattctggagtaagcttaatacccctgaggttggaat 260

                                                                       
Query: 61  tgacaccgaaagacgaaaagttcaaaacactttgtgtttcctcagttcattcatgcatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacaccgaaagacgaaaagttcaaaacactttgtgtttcctcagttcattcatgcatac 320

                                                                       
Query: 121 atgtgcagactcagaagagatggagagctgcgagaaaataggttaaatgccgtaagacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtgcagactcagaagagatggagagctgcgagaaaataggttaaatgccgtaagacat 380

                                                                       
Query: 181 tctaatgagtgaccaagatcattgaaaatggtaaggagaggtatgtaatcaagcaaatga 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tctaatgagtgaccaagatcattgaaaacggtaaggagaggtatgtaatcaagcaaatga 440

                                                                       
Query: 241 aggctcagcggcttggagggctgactgcttgatttgtcatgtaaatgcgtacactgtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aggctcagcggcttggagggctgactgcttgatttgtcatgtaaatgtgtacactgtaaa 500

                                                                       
Query: 301 ggtaggaggggatggtttggataattaaggatttgaggtatgaaaagatgactgatactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtaggaggggatggtttggataattaaggatttgaggtatgaaaagatgactgatactg 560

                                                                       
Query: 361 ctcatagccaagtctaggtataggtgattagaacggatctcacgatctctgaaacacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcatagccaagtctaggtataggtgattagaacggatctcacgatctctgaaacacaga 620

                                                                       
Query: 421 agcattcttgagtgccttcgtgttatcactgaacatgctgtaaatgcagtcagtagctct 480
           |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 621 agcattctcgagtgccttcgtgttatcactgaacctgctgtaaatgcagtcattagctct 680

                                                                       
Query: 481 atacttcacagtccctttcctcccagaatgcaggctgttcctgtgacttattttgaccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atacttcacagtccctttcctcccagaatgcaggctgttcctgtgacttattttgaccaa 740

                                                                       
Query: 541 gagaaagaggatgatgttgtggtgtaaggttttgcatgttgatctgagggcctggcattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagaaagaggatgatgttgtggtgtaaggttttgcatgttgatctgagggcctggcattt 800

                                                                       
Query: 601 tttgcttcatgttttttgggatgctgtcatctatctcatattgcaagccaaccataaaca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttgcttcatgttttttgggatgctgtcatctatctcatattgcaagccaaccataaaca 860

                   
Query: 661 aaatagac 668
           ||||||||
Sbjct: 861 aaatagac 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)