Query= MSMg01no451_l16.b1 MSMg01no451_l16.b1 CHROMAT_FILE:
MSMg01no451_l16.b1 PHD_FILE: MSMg01no451_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:05 2005
(696 letters)
>mm_chrX_53828892_53829989
Length = 1098
Score = 920 bits (476), Expect = 0.0
Identities = 501/512 (97%), Gaps = 6/512 (1%)
Strand = Plus / Minus
Query: 191 agagagagacagagagagac----agagacagagacagagacacagaagggggaagagag 246
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1098 agagagagacagagagagacagagagagacagagacagagacacagaagggggaagagag 1039
Query: 247 aggagagggagagagagattaaaaacccaatctaattgcatcatttattcagtttagttt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 aggagagggagagagagattaaaaacccaatctaattgcatcatttattcagtttagttt 979
Query: 307 gtggttttgagacaaagtcttaccatgtgctcctgctggctttgaattcttgatgcgtct 366
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 978 gtggttttgagacaaagtcttaccatgtactccagctggctttgaattcttgatgtgtct 919
Query: 367 ggctttgcctccagagttctatgccactatgccctgacatttgcagtatgtttcacatgc 426
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ggctctgcctccagagtgctatgccactatgccctgacatttgcagtatgtttcacatgc 859
Query: 427 attgttagctgccctggtgccatatgttgcccagtgtattttcccacagttatctgcagt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 attgttagctgccctggtgccatatgttgcccagtgtattttcccacagttatctgcagt 799
Query: 487 gcatcctatgaaccacatcagacttccacacgtgagtgggaccttctgggcctctctggc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcatcctatgaaccacatcagacttccacacgtgagtgggaccttctgggcctctctggc 739
Query: 547 cgatttcatcattctattcttatgctttgtgctagtcttgattaataatcgtcaacagac 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cgatttcatcattctattcttatgctttgtgctagtcttgattaataatcgtcaacagac 679
Query: 607 attcctgagaaatataagctgtataataataataatttgttctt--tgtgtgtgtgtttg 664
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 678 attcctgagaaatataagctgtataataataataatttgttctttgtgtgtgtgtgtttg 619
Query: 665 tcttaacgattcctttgatttctttcccatgt 696
||||||||||||||||||||||||||||||||
Sbjct: 618 tcttaacgattcctttgatttctttcccatgt 587
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1098
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1088
Effective search space: 746368
Effective search space used: 746368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_l16.g1 MSMg01no451_l16.g1 CHROMAT_FILE:
MSMg01no451_l16.g1 PHD_FILE: MSMg01no451_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:05 2005
(658 letters)
>mm_chrX_53712920_53713977
Length = 1058
Score = 1193 bits (617), Expect = 0.0
Identities = 652/671 (97%), Gaps = 14/671 (2%)
Strand = Plus / Plus
Query: 1 tggcttaccaactgaggaagtaaactcaatattttaaaaactgatacatgtaatagacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tggcttaccaactgaggaagtaaactcaatattttaaaaactgatacatgtaatagacat 248
Query: 61 ttattagaattttgactaaagtattaaaagaacatttgttgttgttgttgttttccagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttattagaattttgactaaagtattaaaagaacatttgttgttgttgttgttttccagac 308
Query: 121 agggtttttctgtgtagccctggctatcctggaattcaaagacacccacctgcttctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agggtttttctgtgtagccctggctatcctggaattcaaagacacccacctgcttctgcc 368
Query: 181 tcctgagtgctgggattaaaggtgtgcaccaccactgcctggctaagggagcacctttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcctgagtgctgggattaaaggtgtgcaccaccactgcctggctaagggagcacctttgt 428
Query: 241 tttgttttgtttttctttttctgagacagggtttctctgtatagccctggctgtcctgga 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 429 tttgttttgtttttctttttctgaggcagggtttctctgtatagccctggctgtcctgga 488
Query: 301 ggtcactctgtagaccaggctggcctcgaactcagaaatctgcctgcttctgcctctcaa 360
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 489 ggtcactctgtagaccaggctggcctccaactcagaaatctgcctgcctctgcctctcaa 548
Query: 361 gtgctggaattaaaggagtgtgccaccactgtcc-ggcaaggagcaacttttaatggagt 419
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 549 gtgctggaattaaaggagtgtgccaccactg-cctggcaaggagcaacttttaatggagt 607
Query: 420 cctccattgtggttaagaatctatagaaatgctctggttatcctgaaactttctgt---- 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cctccattgtggttaagaatctatagaaatgctctggttatcctgaaactttctgttcag 667
Query: 476 --------agatcaggctggctttgaactcacagagttcatgctgcctctacctctcaag 527
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 668 gatctttcagatcaggctggctttgaactcacagagttcatgctgcctctacctcccaag 727
Query: 528 tgctgagattatgcctagcttgattttggctttctttcacacttcccctcctccctagct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tgctgagattatgcctagcttgattttggctttctttcacacttcccctcctccctagct 787
Query: 588 atttgaagcatctgacaatagtcattgtaaattatcaaaagaaaaggggatgggatgggg 647
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 788 atttgaagcatctgacaatagtcattgtagattatcaaaagaaaaggggatgggatgggg 847
Query: 648 acttaactcta 658
|||||||||||
Sbjct: 848 acttaactcta 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
