NGGGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTCACTGGGAATTTAAGTTGTAAATGTCATTGCTACAT
TCCTTTGAAAAATTGAGGCAGGGATGATTTACATTTATGAACAGCTGACA
TTTCTGTAGGATGCAAGATACAATGGGAACTTTCTGAAATTATTTTTGGT
AATTCATCTTCAGGAACAAGACCATTTTTATAAGCCAAAGATGGAGAAAA
GGAGGAAAATCATTCAAGAATACTACTAGAAACTTTATTGTCTGTGTGTT
ATTCCATCAGTGGCCACCTCAGATTTGAAAAGCATTACCAAAGCAGCCAA
CCAGAATACTACTAAATAACAGACTTCCAGGAACAGAGAGGTCGGAGTAG
AACATCAGTATCTGATGGTAGTCTAACAGAAGCCATGTGTGTAATTTAAA
AGTTTCCAGTAGCCATATTTAAAAACTGAAAATGAAAAAGTGAATCTAAT
TTAATAACACTTTATTTAATGCTTTAAGGTATCCTTTAACATATTATGGT
ATTTTTATTTAGTGAGTGTGTATGTGTGTGTANNTGTGTGTGTGTGTGAA
ATGCATGTGTGGAGGGCAGTGGGTCCTGGGAATACATCTCANGTCACCAG
GGTTTTCTACAAGAACTTTTATCTACTGACTCATTTTCACTAGTTCAATA
TTTATCTAAGATATCATTATTTAAACATGCAACCTAAAATGTGG

NTTTCGATGCAANNGGAANNCTNNNNNCCCCCGGCTCCCCAACTTTTGGG
GGCACCCTAAAATTTTCCCCCAAAAACCCAAAAATAAGGGTTGTCTTTCT
CCAAAAAAAAGTGTTCCNCCGGCCCCCCCCTTTTNAAATTTTCCCTCTTA
CCCAAANAAAACCTNAAANGCCTTTCCTTNCCNAAATGTACCGAAATTTT
AGCAAAAACATTTTTNCAAAAATTCACCACCCTTTCCCTTNCACGCTTTC
TGATTCCCTTTCTCCCCCCGCCANNNNTTTCCAAAAACAACCNCCGGAAC
NAAAAAATTTCANCTTTTCCCCNNNNNNNNNNNAAAAAAANCCCNNNNTC
TTAACCACCCCCCCCCCCTCAAAAANNNNGGCCAAATAAATATTCCTACT
TCCCCCCCCCACCCCCNCNNNNACAAAAAGGCCACCCGCACGCGGACGGC
GAANACCAACCACTACCCCCCTCCGATGGGTGGGGGGACGCGCCCNNNNN
NNNNNCCAAAAAACCACCCCCCGGCCCCCNNCNNNNNNNNNTNNNNNNNN
TCTCTTTAGACCCCCTCGCTCATCAANNCCNNNNNNTAGGGGGGCTCCCC
CCCNNCCGCGCCCTTNNCCGGANTTGCGGGNNNNNNNNNNNNNNNNNTNN
TGGTGCGTTGAGCGGGGGGCGACGNTTTNCTTNNNNNNNNNNNNNNNNNN
NNNNNTTTACGAGNNNCAAGCACGCTCACGAAACTTNGGGGGCCGGGGNG
GTGNTTGGGGGGGGTGGGGGGAATAGCACCCCTAGCCCC

Query= MSMg01no451_m03.b1 MSMg01no451_m03.b1 CHROMAT_FILE:
MSMg01no451_m03.b1 PHD_FILE: MSMg01no451_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:07 2005
         (584 letters)



>mm_chrX_157971953_157972936
          Length = 984

 Score = 1064 bits (550), Expect = 0.0
 Identities = 571/580 (98%), Gaps = 4/580 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcactgggaatttaagttgtaaatgtcattgctacattcctttgaaaaattga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcttcactgggaatttaagttgtaaatgtcattgctacattccttcgaaaaattga 264

                                                                       
Query: 65  ggcagggatgatttacatttatgaacagctgacatttctgtaggatgcaagatacaatgg 124
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 265 ggcagggatgatttacatttatgaacagctgacatttctgtagaatgcaatatacaatgg 324

                                                                       
Query: 125 gaactttctgaaattatttttggtaattcatcttcaggaacaagaccatttttataagcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaactttctgaaattatttttggtaattcatcttcaggaacaagaccatttttataagcc 384

                                                                       
Query: 185 aaagatggagaaaaggaggaaaatcattcaagaatactactagaaactttattgtctgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagatggagaaaaggaggaaaatcattcaagaatactactagaaactttattgtctgtg 444

                                                                       
Query: 245 tgttattccatcagtggccacctcagatttgaaaagcattaccaaagcagccaaccagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttattccatcagtggccacctcagatttgaaaagcattaccaaagcagccaaccagaa 504

                                                                       
Query: 305 tactactaaataacagacttccaggaacagagaggtcggagtagaacatcagtatctgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tactactaaataacagacttccaggaacagagaggtcggagtagaacatcagtatctgat 564

                                                                       
Query: 365 ggtagtctaacagaagccatgtgtgtaatttaaaagtttccagtagccatatttaaaaac 424
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggagtctaacagaagccatgtgtgtaatttaaaagtttccagtagccatatttaaaaac 624

                                                                       
Query: 425 tgaaaatgaaaaagtgaatctaatttaataacactttatttaatgctttaaggtatcctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaaaatgaaaaagtgaatctaatttaataacactttatttaatgctttaaggtatcctt 684

                                                                       
Query: 485 taacatattatggtatttttatttagtgagtgtgtatgtgtgtgtanntgtgtgtgtgtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 685 taacatattatggtatttttatttagtgagtgtgtatgtgtgtgta----tgtgtgtgtg 740

                                                   
Query: 545 tgaaatgcatgtgtggagggcagtgggtcctgggaataca 584
           |||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 tgaaatgcatgtgtggagagcagtgggtcctgggaataca 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)