NGGGAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAATATTTGCAAAATTTTAAATTCACTTGATTTATTATC
CTTATGTTTACACTACCATTTTTTGTAGTAGTAGTAGTAGTTGTTGTTAT
TGTTGTTGTTGTTGTTGTTTAATTTAGTTTGGCCTACATTGCCTCCTACT
GCTAGTGAAAGATATTGGACATTTTTTCATCCTTAGATATAACATAGAAA
GTTAAACATTCATTTCCCAGAATTTTATTTTAATGTCTCCTTATATGTGT
CTGCTTAGTGCTGCCATTTTGCTCTCTCATGGGCTGTTCAGTTAATGGAG
TGAGAAGACTTTAGGGAGCATAGTAACAAACTGCAGCCTAGTTTTATAAA
TGTAATATTGCAAAAGCCCTAAAACTAACTCTCTCTCTATCTCTCTTTCT
CTCTCTCTCTCTCTCTCACACACACACTATATTTTTTGATGGGAGAATAT
AATATAAAAATCACGATGAAAATTATAATTTCATATGATAAATTCAAGAA
TAAATAGAGGCTGCTAGTAATGCATATTAAATGCTATAGAATTTATATTA
AAACTTTATGTGATATTTGAAATGGAGCTTAAAGTATTATTACTCACATT
AAATGTCAATATATGCTTTTATTCTTTGATATTTTCTTTGGATAGAGTTG
TTCATGTGGACAAGAATTTTAACATAAAG

NNNNTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGTTATCTAT
TCAGTAACATTCAAATTTACTTTTAGTAGAAACAGTGAAACTAACTAGGC
ATTACAAAGAACGGAGCTAGAATAGCTCAGGGCTAGTCTGCAGAGTGATT
ACTTAGGGCAGTAGCCAGTCTCACTCAAACAAGGGAATACACAGTGGCCT
AGCTAATAGGTGGGTTTACTATGAAAGAGCTAGGGAATCCCATTGAGACA
GGGATCTTCTCTACAGCCAGGTATAGCAGGCTATATTGCATATTAGAAGC
AAGTTGGTGAATTCTTCTGACAATTGGAGATTCTCCTCAGATACTTAAAA
GTTACACTCATACAAGAATTTATCAAGGCCTTGGAAATAGGAGGTTTGTG
GTATTACATTATTCATGAGAAGGTCTGCTAGAGCAGAACCCCCTGGTGCT
AGCTTTCACAAGGCTCAAAGGAGTAGCACAAATTGTGACTAGGGTGTGAA
ATCCTTACCTGTCATTAAGCCAAACCTAGGCAGGACTGCTTTATCTTTAC
TGTAAACATTTACCTGGTTCCTGTAAGTCTCTTTGTAGTCATTCCTTTGT
TTTGTGTCAGGTAACTTCAATGTACTTTGCCTGCTGTGACATCCTACCCC
TTTATTTTCTGTATTATATAAGACTGGTGTTCACTTTGTGA

Query= MSMg01no452_m11.b1 MSMg01no452_m11.b1 CHROMAT_FILE:
MSMg01no452_m11.b1 PHD_FILE: MSMg01no452_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:26 2005
         (678 letters)



>mm_chrX_81253653_81254730
          Length = 1078

 Score = 1226 bits (634), Expect = 0.0
 Identities = 664/680 (97%), Gaps = 12/680 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatatttgcaaaattttaaattcacttgatttattatccttatgtttacacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatatttgcaaaattttaaattcacttgatttattatccttatgtttacacta 264

                                                                       
Query: 65  ccattttttgtagtagtagtagtagttgttgttattgttgttgttgttgttgtttaattt 124
           |||||||||||||||||||||||||| |||||||      ||||||||||||||||||||
Sbjct: 265 ccattttttgtagtagtagtagtagtagttgtta------ttgttgttgttgtttaattt 318

                                                                       
Query: 125 agtttggcctacattgcctcctactgctagtgaaagatattggacattttttcatcctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtttggcctacattgcctcctactgctagtgaaagatattggacattttttcatcctta 378

                                                                       
Query: 185 gatataacatagaaagttaaacattcatttcccagaattttattttaatgtctccttata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatataacatagaaagttaaacattcatttcccagaattttattttaatgtctccttata 438

                                                                       
Query: 245 tgtgtctgcttagtgctgccattttgctctctcatgggctgttcagttaatggagtgaga 304
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 tgtgtctgcttggtgctgccattttgctctctcatgggttgttcagttaatggagtgaga 498

                                                                       
Query: 305 agactttagggagcatagtaacaaactgcagcctagttttataaatgtaatattgcaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agactttagggagcatagtaacaaactgcagcctagttttataaatgtaatattgcaaaa 558

                                                                       
Query: 365 gccctaaaactaactctctctctatctctct--ttctctctctctctctctctcac---- 418
           |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |    
Sbjct: 559 gccctaaaactaactctctctctatctctctctttctctctctctctctctctctctctc 618

                                                                       
Query: 419 acacacactatattttttgatgggagaatataatataaaaatcacgatgaaaattataat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acacacactatattttttgatgggagaatataatataaaaatcacgatgaaaattataat 678

                                                                       
Query: 479 ttcatatgataaattcaagaataaatagaggctgctagtaatgcatattaaatgctatag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttcatatgataaattcaagaataaatagaggctgctagtaatgcatattaaatgctatag 738

                                                                       
Query: 539 aatttatattaaaactttatgtgatatttgaaatggagcttaaagtattattactcacat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatttatattaaaactttatgtgatatttgaaatggagcttaaagtattattactcacat 798

                                                                       
Query: 599 taaatgtcaatatatgcttttattctttgatattttctttggatagagttgttcatgtgg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 taaatgtcaatatatgcttttattctttgatattttctttggatagagttgttcatgtgg 858

                               
Query: 659 acaagaattttaacataaag 678
           ||||||||||||||||||||
Sbjct: 859 acaagaattttaacataaag 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)