BAC Information

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BAC

Clone NameMSMg01-453E15
ChromosomeX (Build37)
Map Location 117,624,099 - 117,624,784
singlet/doubletsinglet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453E15.T7 (MSMg01no453_e15.b1)MSMg01-453E15.TJ (MSMg01no453_e15.g1)
ACCAG540339AG540340
length758760
length of high quality
(start - end)
692 (67 - 758)686 (75 - 760)
definitionCHROMAT_FILE: MSMg01no453_e15.b1 PHD_FILE: MSMg01no453_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:07 2005CHROMAT_FILE: MSMg01no453_e15.g1 PHD_FILE: MSMg01no453_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATCAAAACACAAAATGAGATACATGCAGGCCCTGCAAATACTG
AGTCATGAAGGTCATGTGCATACTTTGTCACTCTTTGTGAGTTTATATGT
ATTTCTTGATTTGTTTAGAAGGCCTTGTGTCTAAGGTATCCTCCATCTTT
CCTGGCTTTTACAGTCTTTCTCTCTCCCCTTCTAGAGGTTTCCCTAAGCT
CTGAGGGGAGAAATTTGATGGAAACTAGATTCTTCCTACATATTGTCTAA
TAGTGTGTCTCTGTATTTGTTTCATTTGCTTATTGTAAGTCATTAATAAG
CAAGCCATATCTATAGAACCAAAGAGGTTAGGTATAGTGTAAGGGACTAG
TAGTAAGTATGGGACCGTGAAAGGTAGCTTGGTTCTTAGTTGAGCTTAGG
CTAGACACCTGGAGACCTTGAAGGGAACGTAGGTGTTTCCCCTGTTCCCG
GGCACCAGGCCTCTGTCACTAGCCACAACCCTCCATAGATTTGTGGTCAT
CAGTAACATAAGGAAAGTGCTCCAAACTCCTCCACAGATAGAGGATATGT
ATGACCTTTGGTCACATAGCTTCAAGACAGATCTCTATTTTTATGAGATA
CATGGAGGCATGGAGGGCTTAGTCAATAAGCTTTTCCTTCCCAGACCCTT
CTTTCTGCAAAAGGTATTTAACCTCAAGCCCACCTGAGAAGTGAAGTATC
ATTTTACT
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGATGACAGATTCCTCTGCCTACCT
TCTGATAGGGTCTTCCTGCTTTGTTAACTTTCTATAGTAGCAAATTCAAA
GATCACCCTAGAAATGTATAATACCAATGTCTTAGGAATATATTAACTTA
TTAAATTTACAAAATTAGCAACCACAGTACAGTAGTCGGCAAAAAATGAG
AAACATAAAAATAATTCTGTGCTTACTTCAGGGAATTTATCTTGAATTTC
AGATATAAATACTGAAGTATCTTTATTTCTCCTAGGACTTTCAATTTTTA
AAATGTTTAATAAATATTTCACAATTTGTTCACTAAAATAATGGACCAGA
TTAAGTTGATACTTTAATCATATTTAAATTGTCATATCTTGAATGTCACA
GCAGGAAAAATAAGTGGTTGGTAAATATTATTACTGTTAGCATTAGTAGT
ATTCTGTTTCCTAGAAACAAAGGAATAGTATTTCTCTCTGGTCTCAAAAA
TTATTAAAACTAATTTGGATCTTTTCTGAATACTTGAAAACTTAATATTC
TCACCTGGTGCTTGAATATAAATAATGCATTACCATGTTCTCACCTGAAT
TTATTATAATTTTATTGTAATTATACTCAGTTATGAAAAACTGTCCTTTA
TTTACAGAAAATTAAACTTCAAAATCCCCTTTTTTTTCTGAAAATGAAAA
TGTTTAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_e15.g1 MSMg01no453_e15.g1 CHROMAT_FILE:
MSMg01no453_e15.g1 PHD_FILE: MSMg01no453_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:07 2005
         (686 letters)



>mm_chrX_117623899_117624984
          Length = 1086

 Score = 1319 bits (682), Expect = 0.0
 Identities = 685/686 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatgacagattcctctgcctaccttctgatagggtcttcctgctttgttaactttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatgacagattcctctgcctaccttctgatagggtcttcctgctttgttaactttcta 260

                                                                       
Query: 61  tagtagcaaattcaaagatcaccctagaaatgtataataccaatgtcttaggaatatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtagcaaattcaaagatcaccctagaaatgtataataccaatgtcttaggaatatatt 320

                                                                       
Query: 121 aacttattaaatttacaaaattagcaaccacagtacagtagtcggcaaaaaatgagaaac 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aacttattaaatttacaaaattagcaaccacagtacattagtcggcaaaaaatgagaaac 380

                                                                       
Query: 181 ataaaaataattctgtgcttacttcagggaatttatcttgaatttcagatataaatactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaaaataattctgtgcttacttcagggaatttatcttgaatttcagatataaatactg 440

                                                                       
Query: 241 aagtatctttatttctcctaggactttcaatttttaaaatgtttaataaatatttcacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtatctttatttctcctaggactttcaatttttaaaatgtttaataaatatttcacaa 500

                                                                       
Query: 301 tttgttcactaaaataatggaccagattaagttgatactttaatcatatttaaattgtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgttcactaaaataatggaccagattaagttgatactttaatcatatttaaattgtca 560

                                                                       
Query: 361 tatcttgaatgtcacagcaggaaaaataagtggttggtaaatattattactgttagcatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatcttgaatgtcacagcaggaaaaataagtggttggtaaatattattactgttagcatt 620

                                                                       
Query: 421 agtagtattctgtttcctagaaacaaaggaatagtatttctctctggtctcaaaaattat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtagtattctgtttcctagaaacaaaggaatagtatttctctctggtctcaaaaattat 680

                                                                       
Query: 481 taaaactaatttggatcttttctgaatacttgaaaacttaatattctcacctggtgcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaactaatttggatcttttctgaatacttgaaaacttaatattctcacctggtgcttg 740

                                                                       
Query: 541 aatataaataatgcattaccatgttctcacctgaatttattataattttattgtaattat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatataaataatgcattaccatgttctcacctgaatttattataattttattgtaattat 800

                                                                       
Query: 601 actcagttatgaaaaactgtcctttatttacagaaaattaaacttcaaaatccccttttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actcagttatgaaaaactgtcctttatttacagaaaattaaacttcaaaatccccttttt 860

                                     
Query: 661 tttctgaaaatgaaaatgtttagaga 686
           ||||||||||||||||||||||||||
Sbjct: 861 tttctgaaaatgaaaatgtttagaga 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)