BAC Information

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BAC

Clone NameMSMg01-454K07
ChromosomeX (Build37)
Map Location 48,939,827 - 48,940,068
singlet/doubletsinglet
Overlap geneHs6st2
Upstream gene2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356
Downstream geneUsp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454K07.T7 (MSMg01no454_k07.b1)MSMg01-454K07.TJ (MSMg01no454_k07.g1)
ACCAG541372AG541373
length753751
length of high quality
(start - end)
244 (76 - 319)242 (79 - 320)
definitionCHROMAT_FILE: MSMg01no454_k07.b1 PHD_FILE: MSMg01no454_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:54 2005CHROMAT_FILE: MSMg01no454_k07.g1 PHD_FILE: MSMg01no454_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGCG
CGGAATTCATTGTTTTTCCTAGCTGAGTCGTACTCCATTGTATACATGTA
CCACATTTTCTGTATCCATTCCTCTGTTGAGTGACATCTAGGTTCTTTCC
AGCTTCTGGTTATTATAAATAAGGCTGCTATGAATATAGTAGAGCATGTG
TCCTTATTATCAGTTGGAACATCTTCTGGATATATGCCCAGGAATGTTAT
TGTGTGATCCTCTGGTAGGACTATGTCCAATTTTCTGAGGAACCACCAGA
CGGATTTCCAGAGTGGTTGTTTTTTCTTGCAATTCCACCAACAATGGAGG
AGTGTTCCTCTTTCTCCATATCCTCGGCAGCATCTGTTGTCACCTGAATT
TTTGATCTTAGTCATTCTAACTGGTGTGAGGTTGAATCTCAGGGTTGCTT
TGATTTGCATTTCCCTGAAGATTAAGGATGTTGAACATTTTTTCAGGTGC
TTCTCTGCCATTCGGTATTCCTCATGCGAGAATTCTTTGTTCACTTCTGA
TACCCATTTTTTACTGGGGGTATTTGACCCTCCTGAATCCCTCCTTCTCG
AGCTTTTTTATACTATTAGCCTACCATTCCCCCCCTTTGCATTTTTTCCC
CCCACTTTTTCTCCCCCTTTACTTGCAGTTTGGTCCTTTTTCCCCTTCTT
AATTCAATATATCTGAGTTTTTTATTAAATATTCCCCACGCCTCCTCTTT
TCG
TTTAACAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTGTATTTTTAGGGAATAATTAC
AAGAAAAAAGTATGTTCGGTTTCAGTACAAGCCCAATTCACTTCAAATAT
TTTAAATCTGCATTTAGTAGAATTTACAAAAGTGGAACCCATGAATAAGG
AGAGTCAACTGTATGTGCTCACATCACATGCTTACACAACATGTGCTTTA
CGTTTCAGTAGTGTTCCAAGAAGTCACTAATGGTAGTTGTCCATGTTGGC
ATTAGTTGACAAGGTACTGTTTATCNTCTACCTGGCTTACACTGGCAAAT
GACTTTTTGATGTATATAATTTCTTCATAATTACTATAGCCATTAAACAT
CCTGAATTCTACAAAAACTAATAATATTTACCATGATATTCCCAGACTAT
TTAAATAGAAACGTGAAAATGTTTTTAAAATAGATCATATAATACGTTAC
TTCTGTATTTCTGCGTCTGACCGTTGTTCTTAACATCCATAATGGTGAGA
AGGGCACTCATGTTTGCCCCTGAAAATGTTAGTTTTCCTTAAGAAAGTTG
CTAAGCAGTCTGAAATAATAAGGTGAAGTAGGGAATTTTTTCCTTATTTT
CCTTTGACTAAAACTTAACCGATTTTCCTATCCTCCGCCTATAATTTGGG
TCAGGTCTCCGTACTTTTTTTACATAACCATCCCTTTTAACTTTTTTATT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_k07.g1 MSMg01no454_k07.g1 CHROMAT_FILE:
MSMg01no454_k07.g1 PHD_FILE: MSMg01no454_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:54 2005
         (242 letters)



>mm_chrX_48939627_48940268
          Length = 642

 Score =  414 bits (214), Expect = e-120
 Identities = 235/242 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatttttagggaataattacaagaaaaaagtatgttcggtttcagtacaagcccaatt 60
           ||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||
Sbjct: 201 tgtatttttagggaataattacaagaaaaaagtatgtgcgggttcagtacaaacgcaatt 260

                                                                       
Query: 61  cacttcaaatattttaaatctgcatttagtagaatttacaaaagtggaacccatgaataa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cacttcaaatattttaaatctgcatttagtggaatttacaaaagtggaacccatgaataa 320

                                                                       
Query: 121 ggagagtcaactgtatgtgctcacatcacatgcttacacaacatgtgctttacgtttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 321 ggagagtcaactgtatgtgctcacatcacatgcttacacaacatgtgctttacggctcag 380

                                                                       
Query: 181 tagtgttccaagaagtcactaatggtagttgtccatgttggcattagttgacaaggtact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtgttccaagaagtcactaatggtagttgtccatgttggcattagttgacaaggtact 440

             
Query: 241 gt 242
           ||
Sbjct: 441 gt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)