MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-454N20
Chromosome	X (Build37)
Map Location	19,853,534 - 19,853,969
singlet/doublet	singlet
Overlap gene	Slc9a7
Upstream gene	LOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7, LOC668277
Downstream gene	LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043953 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043953
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	BC049702 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:278255 MGI:3037654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC675558 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC668995 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668995
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 5 Proteins pseudo : _no_value

name	LOC385336 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385336
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 667 ESTs, 8 Proteins pseudo : _no_value

name	Chst7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60322 MGI:1891767
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc9a7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236727 MGI:2444530
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668277 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668277
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 146 ESTs, 6 Proteins pseudo : _no_value

name	LOC100043954 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043954
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 Proteins pseudo : _no_value

name	EG668996 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668996 MGI:3643654
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	Rp2h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19889 MGI:1277953
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668283 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668283
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs pseudo : _no_value

name	Phf16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382207 MGI:2148019
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rgn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19733 MGI:108024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufb11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104130 MGI:1349919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236732 MGI:2384310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube1x (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22201 MGI:98890
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pctk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18555 MGI:97516
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236733 MGI:2384312
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043955 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Araf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11836 MGI:88065
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Syn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20964 MGI:98460
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Timp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21857 MGI:98752
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cfp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18636 MGI:97545
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13712 MGI:101833
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Uxt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22294 MGI:1277988
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A230072C01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320742 MGI:2444644
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs

name	Zfp182 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319535 MGI:2442220
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spaca5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:278203 MGI:2685564
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 Proteins

name	D930016N04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245368 MGI:3045326
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ssxa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:385338 MGI:2446782
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein

name	Gm1848 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236737 MGI:3037706
definition	note : gene model 1848, (NCBI) pseudo : _no_value

name	EG546268 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546268 MGI:3647035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	BC049702 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379409 GeneID:278255 MGI:3037654
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC049702 transcript_id : NM_207524.2

name	Chst7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11096335 GeneID:60322 MGI:1891767
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbohydrate (N-acetylglucosamino) sulfotransferase 7 transcript_id : NM_021715.1

name	Slc9a7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130399 GeneID:236727 MGI:2444530
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 9 (sodium/hydrogen exchanger), isoform 7 transcript_id : NM_177353.3

name	EG668996 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271060 GeneID:668996 MGI:3643654
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : predicted gene, EG668996 transcript_id : XM_001006687.2

name	Rp2h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802725 GeneID:19889 MGI:1277953
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinitis pigmentosa 2 homolog (human) transcript_id : NM_133669.3

name	Phf16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40556367 GeneID:382207 MGI:2148019
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PHD finger protein 16 transcript_id : NM_199317.1

name	Rgn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130555 GeneID:19733 MGI:108024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regucalcin transcript_id : NM_009060.2

name	Ndufb11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980892 GeneID:104130 MGI:1349919
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11 transcript_id : NM_019435.2

name	Rbm10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704123 GeneID:236732 MGI:2384310
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 10 transcript_id : NM_145627.1

name	Ube1x (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803326 GeneID:22201 MGI:98890
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-activating enzyme E1, Chr X transcript_id : NM_009457.3

name	Pctk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372498 GeneID:18555 MGI:97516
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PCTAIRE-motif protein kinase 1 transcript_id : NM_011049.3

name	Usp11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802478 GeneID:236733 MGI:2384312
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 11 transcript_id : NM_145628.3

name	Araf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27545180 GeneID:11836 MGI:88065
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : v-raf murine sarcoma 3611 viral oncogene homolog transcript_id : NM_009703.1

name	Syn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62177179 GeneID:20964 MGI:98460
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synapsin I transcript_id : NM_013680.3

name	Timp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113205062 GeneID:21857 MGI:98752
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tissue inhibitor of metalloproteinase 1 transcript_id : NM_001044384.1

name	Timp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113205064 GeneID:21857 MGI:98752
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tissue inhibitor of metalloproteinase 1 transcript_id : NM_011593.2

name	Cfp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364936 GeneID:18636 MGI:97545
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement factor properdin transcript_id : NM_008823.3

name	Elk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116292181 GeneID:13712 MGI:101833
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELK1, member of ETS oncogene family transcript_id : NM_007922.4

name	Uxt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803139 GeneID:22294 MGI:1277988
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitously expressed transcript transcript_id : NM_013840.3

name	A230072C01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271007 GeneID:320742 MGI:2444644
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs product : RIKEN cDNA A230072C01 gene transcript_id : XM_001478179.1

name	Zfp182 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67972405 GeneID:319535 MGI:2442220
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 182 transcript_id : NM_001013387.1

name	Spaca5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407029 GeneID:278203 MGI:2685564
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 Proteins product : sperm acrosome associated 5 transcript_id : XM_001006691.1

name	D930016N04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802563 GeneID:245368 MGI:3045326
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D930016N04 gene transcript_id : NM_183185.2

name	Ssxa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271062 GeneID:385338 MGI:2446782
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein product : synovial sarcoma, X member A, breakpoint 1 transcript_id : XM_001481340.1

name	EG546268 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407033 GeneID:546268 MGI:3647035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : predicted gene, EG546268 transcript_id : XM_001006694.1

name	BC049702 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46430510 CCDS:CCDS30039.1 GeneID:278255 MGI:3037654
definition	codon_start : 1 product : hypothetical protein LOC278255 protein_id : NP_997407.1

name	Chst7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11096336 CCDS:CCDS30040.1 GeneID:60322 MGI:1891767
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008459 - chondroitin 6-sulfotransferase activity [Evidence IEA]; GO:0008146 - sulfotransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA] codon_start : 1 function : This enzyme catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate to position 6 of the non-reducing GlcNAc residue of oligosaccharides product : carbohydrate (N-acetylglucosamino) sulfotransferase 7 protein_id : NP_068361.1

name	Slc9a7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893491 GeneID:236727 MGI:2444530
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0005802 - Golgi trans face [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS] GO_function : GO:0015297 - antiporter activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0015386 - potassium:hydrogen antiporter activity [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015385 - sodium:hydrogen antiporter activity [Evidence ISS] [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006885 - regulation of pH [Evidence ISS]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 9, member 7 protein_id : NP_796327.1

name	EG668996 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271061 GeneID:668996 MGI:3643654
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001006687.2

name	Rp2h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526820 CCDS:CCDS30041.1 GeneID:19889 MGI:1277953
definition	codon_start : 1 product : retinitis pigmentosa 2 homolog protein_id : NP_598430.1

name	Phf16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40556368 CCDS:CCDS30042.1 GeneID:382207 MGI:2148019
definition	GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : PHD finger protein 16 protein_id : NP_955021.1

name	Rgn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677739 CCDS:CCDS30043.1 GeneID:19733 MGI:108024
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030234 - enzyme regulator activity [Evidence IEA] codon_start : 1 product : regucalcin protein_id : NP_033086.1

name	Ndufb11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506933 GeneID:104130 MGI:1349919
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0003954 - NADH dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] codon_start : 1 note : nuclear protein 15.6 product : neuronal protein 15.6 protein_id : NP_062308.1

name	Rbm10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704124 GeneID:236732 MGI:2384310
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : RNA binding motif protein 10 protein_id : NP_663602.1

name	Ube1x (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678483 CCDS:CCDS30044.1 GeneID:22201 MGI:98890
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004839 - ubiquitin activating enzyme activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 product : ubiquitin-activating enzyme E1, Chr X protein_id : NP_033483.1

name	Pctk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7242173 CCDS:CCDS30045.1 GeneID:18555 MGI:97516
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : PCTAIRE-motif protein kinase 1 protein_id : NP_035179.1

name	Usp11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981834 GeneID:236733 MGI:2384312
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin specific protease 11 protein_id : NP_663603.2

name	Araf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27545181 GeneID:11836 MGI:88065
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0050875 - cellular physiological process [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 note : raf-related oncogene; v-raf murine sarcoma 3611 viral oncogene homolog 1 product : v-raf murine sarcoma 3611 viral oncogene homolog protein_id : NP_033833.1

name	Syn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62177180 GeneID:20964 MGI:98460
definition	GO_component : GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IEA]; GO:0030672 - synaptic vesicle membrane [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence TAS] GO_process : GO:0007269 - neurotransmitter secretion [Evidence IMP] [Evidence IGI] codon_start : 1 product : synapsin I protein_id : NP_038708.2

name	Timp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113205063 GeneID:21857 MGI:98752
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA] GO_function : GO:0004857 - enzyme inhibitor activity [Evidence IEA]; GO:0008191 - metalloendopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0043249 - erythrocyte maturation [Evidence IEA] codon_start : 1 note : tissue inhibitor of metalloproteinase-1 product : tissue inhibitor of metalloproteinase 1 protein_id : NP_001037849.1

name	Timp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113205065 CCDS:CCDS30046.1 GeneID:21857 MGI:98752
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA] GO_function : GO:0004857 - enzyme inhibitor activity [Evidence IEA]; GO:0008191 - metalloendopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0043249 - erythrocyte maturation [Evidence IEA] codon_start : 1 note : tissue inhibitor of metalloproteinase-1 product : tissue inhibitor of metalloproteinase 1 protein_id : NP_035723.2

name	Cfp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326449 CCDS:CCDS30047.1 GeneID:18636 MGI:97545
definition	GO_process : GO:0006957 - complement activation, alternative pathway [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 product : properdin factor, complement protein_id : NP_032849.2

name	Elk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116292182 CCDS:CCDS30048.1 GeneID:13712 MGI:101833
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] [Evidence ISS]; GO:0016563 - transcriptional activator activity [Evidence ISS] GO_process : GO:0050875 - cellular physiological process [Evidence IEA]; GO:0045941 - positive regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : ELK1, member of ETS oncogene family protein_id : NP_031948.4

name	Uxt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30841023 CCDS:CCDS30049.1 GeneID:22294 MGI:1277988
definition	GO_component : GO:0005813 - centrosome [Evidence ISS]; GO:0005856 - cytoskeleton [Evidence ISS]; GO:0000930 - gamma-tubulin complex [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS]; GO:0016272 - prefoldin complex [Evidence IEA] GO_function : GO:0048487 - beta-tubulin binding [Evidence ISS]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0051297 - centrosome organization and biogenesis [Evidence ISS]; GO:0000226 - microtubule cytoskeleton organization and biogenesis [Evidence ISS]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : ubiquitously expressed transcript protein_id : NP_038868.2

name	A230072C01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271008 GeneID:320742 MGI:2444644
definition	codon_start : 1 product : hypothetical protein LOC320742 protein_id : XP_001478229.1

name	Zfp182 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67972406 GeneID:319535 MGI:2442220
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : zinc finger protein 182 protein_id : NP_001013405.1

name	Spaca5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407030 GeneID:278203 MGI:2685564
definition	codon_start : 1 product : sperm acrosome associated 5 protein_id : XP_001006691.1

name	D930016N04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147234 CCDS:CCDS30050.1 GeneID:245368 MGI:3045326
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004185 - serine carboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC245368 protein_id : NP_899008.1

name	Ssxa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271063 GeneID:385338 MGI:2446782
definition	codon_start : 1 exception : unclassified translation discrepancy product : similar to synovial sarcoma, X member A, breakpoint 1 protein_id : XP_001481390.1

name	EG546268 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407034 GeneID:546268 MGI:3647035
definition	codon_start : 1 product : similar to SSXB5 protein protein_id : XP_001006694.1

name	LOC100043953 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043953
definition	number : 1 pseudo : _no_value

name	LOC675558 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675558
definition	number : 1 pseudo : _no_value

name	LOC675558 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675558
definition	number : 2 pseudo : _no_value

name	LOC675558 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675558
definition	number : 3 pseudo : _no_value

name	LOC100043954 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043954
definition	number : 1 pseudo : _no_value

name	LOC100043955 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043955
definition	number : 2 pseudo : _no_value

name	LOC100043955 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043955
definition	number : 1 pseudo : _no_value

name	LOC668995 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271003 GeneID:668995
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 5 Proteins product : similar to rat ribosomal protein L36 pseudo : _no_value transcript_id : XR_033384.1

name	LOC385336 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271004 GeneID:385336
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 667 ESTs, 8 Proteins product : similar to ribosomal protein L23a pseudo : _no_value transcript_id : XR_033388.1

name	LOC668277 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271005 GeneID:668277
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 146 ESTs, 6 Proteins product : similar to 37kDa oncofetal antigen pseudo : _no_value transcript_id : XR_033431.1

name	LOC668283 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271006 GeneID:668283
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : similar to general transcription factor IIa precursor pseudo : _no_value transcript_id : XR_033437.1

clone name	MSMg01-313C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157D03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-419I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123H15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-449K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399A01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-414M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141E14
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-105J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097L11
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-454N20.T7 (MSMg01no454_n20.b1)	MSMg01-454N20.TJ (MSMg01no454_n20.g1)
ACC	AG541540	AG541541
length	772	770
length of high quality (start - end)	436 (68 - 503)	481 (73 - 553)
definition	CHROMAT_FILE: MSMg01no454_n20.b1 PHD_FILE: MSMg01no454_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:12 2005	CHROMAT_FILE: MSMg01no454_n20.g1 PHD_FILE: MSMg01no454_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:12 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT TCCATATTTTTCCTAATTCTGTGAAGCTACTTCTATGGCTCCACTTATTG TTGCTACACAAATGTGGTCCCAGAGCTAGCAGCATGTGGATCACTTGAGT GCTTTTTGGGAATGGTGAACTATGACCCTGCCTTAGAATTTCTAGGGCTG GGGCCTAGAAGTCTTGTTGTAACACATTATCAGGATTTTGTTTGTTTGAA TTGAAGTTGCAGAGTTACTGGCTGACAGCAAACAGATTCCTCATCTATTC CCCTCCCAAACATGTTTATAGCCTTTCCCATTTGGTAATGGGAGAACTCC AATTTGATGTGTTTTAAAGATTTTATTTTTAAAGTTTTGTTTATGAATAT GTGTCTTTGTTAGTATATGCTTTGAGTGTCTGTATCTATAGAGCCGTTAG AGGGTAAAGGGTTAGAGTTACAGGCATTTGTGAGCTACCTAACGTGGATG CAGGGAAATTAATTCTGGTCCTCTGGAAGAAAAAAAGGAAAAAAATTTCA TATACAAGACTGCCCCCCCGAAACGTTTTTTTTTCCTCTTTTATTAGGAA TTTACCCCTTTTACTTTCCAAAGTCATACCAAGAGCACCCCTTTTTTTCC TTCCCCTACCCCCTTGGCTCCCTATTTTCCCTTTTTTGTCCTGGTTTTTC CCCGTGACGGGGTGTTAATACCTTTCCCCCCCCAGTGTCCCCCCTTTTTC TTGCATTTTCCCACCCCTTCCG	TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXATTGATATAAAGAGAGAATTATAACCTT TTGATACTTAAAGATGGGAAATTTCACCTGCGGTTTGGAACTAGATAGGG AATATTAGTCATTGACTCCAAGTAGAAAGAGCAGTGATAATCTCCTGCTA TGAGCAGGTATTTATTAATAGAAGACTGTGGCTCCAGGTAGAGAGCATAA TAGATAGATATTACAATAGGTATTAATTAAATAAAATCGGTGGCTCCTGG TAGAGAGCAAAACATATTTTCGGTATAACAGGATGGCTGCTCTAGGCAGA GAGCTTAACAATTAAAAACTATCTGCTTCCTATAGGCAGATATTAGTGGA AGTTTAAACTAATTGCTTTAAAGATGGTATAAAGATGTATTAGTCTAATA AGTCTTACAGGATACTCACATTCTGTCTAACATGGGCTCCACTGGAATTT TGGGTTAATATCCTGACATAACAAATTAGAAACACCTAAACAGGCTAAAT TGTATGTGATTTTGAGNGTTGTGNNGGNTTTATTGNNCCNCCGNNAANNA NNTNANTTTANNTTTCTTGGTTACTGGCTTANGATAATGTTTTTTTTTTT AATTTTTTCGCCTTTGGGTTTTTCCAAATTCATAATTGCCCCTTTTTTTT CTTTTTTTTTTGGTTTTTTTTTATTTCTTTTTTTTTTCCCCCCCTCTTTT TTATTTATATTTCTCCTATG
quality values	Open. Hide. 9 9 9 9 15 30 39 39 39 39 41 35 37 37 23 18 9 9 9 22 22 41 33 33 33 30 30 22 21 12 12 12 9 9 9 9 11 10 10 10 15 15 19 24 33 41 31 31 31 31 31 31 33 33 30 30 25 21 8 8 8 8 8 8 10 15 17 22 21 30 28 33 33 48 48 57 59 59 59 57 57 57 57 57 57 59 59 59 59 53 53 50 68 68 68 68 68 68 53 53 53 53 53 57 53 53 50 50 50 53 44 47 48 57 57 48 48 48 48 41 41 42 41 23 23 9 9 9 23 27 59 47 42 50 50 50 50 53 53 53 53 53 53 53 53 57 57 57 57 57 57 57 57 59 57 59 68 68 68 47 51 47 47 47 47 57 54 54 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 46 43 43 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 53 53 50 47 47 40 25 25 11 21 19 15 11 11 11 15 12 24 30 59 59 59 50 50 53 53 57 57 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 57 57 59 59 57 57 57 57 57 54 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 59 59 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 59 59 59 54 54 48 59 57 57 43 59 59 59 59 59 59 59 59 59 57 47 47 46 46 43 47 39 39 39 59 59 47 47 43 39 37 43 41 32 31 32 35 37 39 40 40 37 37 37 36 36 39 39 34 34 32 29 24 30 31 28 28 28 28 37 28 28 28 37 32 36 36 43 39 37 35 35 39 37 37 33 33 31 29 30 30 28 31 28 32 27 30 30 21 21 12 12 14 15 23 24 10 12 11 14 11 10 12 12 15 30 27 24 26 22 19 24 23 23 15 16 12 9 8 8 14 14 9 14 14 12 12 13 17 13 13 16 16 14 14 10 9 9 6 6 6 6 8 8 11 11 12 12 12 17 18 14 12 11 11 15 11 10 8 8 6 6 6 6 8 7 9 9 10 9 9 8 8 8 8 8 6 6 6 15 19 15 13 10 13 10 10 8 8 8 15 8 8 8 8 8 8 8 10 8 15 8 8 8 8 14 8 9 9 10 9 9 9 10 10 10 10 10 13 8 8 6 6 8 8 8 6 7 14 12 21 16 24 16 24 22 14 8 8 8 8 8 8 8 8 8 8 8 8 8 12 20 18 11 11 8 8 8 8 10 10 11 10 13 10 10 10 10 10 10 9 12 10 24 17 16 9 9 13 15 14 14 14 14 15 26 29 30 28 17 22 13 13 8 8 8 8 8 8 8 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 15 22 12 10 10 9 9 13 14 22 15 15 12 11 11 11 13 8 9 10 8 8 8 8 8 8 11 10 14 14 12 12 7 7 8 8 8 8 13 8 8 8	Open. Hide. 10 10 9 9 8 7 7 9 9 15 16 29 29 41 37 39 39 39 37 37 39 39 39 40 39 21 27 12 9 9 9 11 11 9 13 9 10 10 21 19 32 28 30 37 39 53 47 47 48 44 39 50 42 41 28 25 8 6 6 8 8 13 15 12 12 20 14 18 24 24 29 29 33 36 36 47 53 53 53 57 53 53 57 57 57 57 59 47 47 42 42 42 47 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 47 50 50 50 50 50 68 57 57 57 57 57 57 57 68 68 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 50 50 57 57 57 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 50 54 57 57 57 57 68 68 68 68 68 68 68 68 68 59 59 59 59 59 44 47 43 42 42 37 35 44 44 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 53 50 50 50 50 47 32 25 18 12 11 11 11 12 12 11 11 18 16 30 41 59 59 59 59 53 53 50 50 50 53 57 59 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 57 57 57 54 54 54 54 54 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 57 57 57 48 54 57 59 59 59 59 59 59 59 68 59 59 57 54 54 59 59 59 59 59 59 59 59 59 59 59 57 54 57 57 54 54 54 48 48 54 54 54 54 57 57 57 57 59 68 59 59 54 59 59 57 48 48 48 43 43 48 48 59 59 48 48 48 57 57 57 47 47 40 40 40 40 40 41 41 41 39 34 37 43 41 34 36 30 30 30 37 32 37 39 39 34 34 39 43 41 41 32 32 25 27 25 32 36 32 31 34 39 32 28 23 23 24 22 22 28 22 25 28 28 28 20 20 22 20 21 20 20 18 28 30 24 27 32 30 30 24 25 31 31 31 31 39 26 24 20 20 20 31 20 20 19 21 18 22 23 25 19 20 3 0 3 8 8 7 9 3 0 0 3 3 0 3 13 14 14 9 10 3 0 0 3 3 0 3 13 3 0 0 3 3 0 0 3 0 0 3 0 3 0 3 8 8 3 0 0 3 9 10 9 8 8 9 7 7 7 15 10 10 8 8 13 7 7 3 0 3 6 6 6 6 8 8 8 14 14 18 18 11 9 9 9 11 8 10 10 8 8 8 12 9 6 6 6 8 8 17 14 10 8 8 8 8 8 9 7 6 6 8 10 8 6 6 8 8 8 6 6 6 6 9 9 9 9 8 8 8 8 10 12 20 20 11 8 8 8 8 10 12 15 11 14 9 9 8 8 9 10 10 10 11 19 16 8 8 8 8 8 11 9 6 8 6 6 9 9 9 21 17 17 13 9 9 21 21 10 10 10 10 8 8 8 19 19 13 8 9 10 10 10 8 8 8 8 8 8 10 10 10 8 8 8 7 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no454_n20.b1 MSMg01no454_n20.b1 CHROMAT_FILE:
MSMg01no454_n20.b1 PHD_FILE: MSMg01no454_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:12 2005
         (436 letters)



>mm_chrX_19853259_19854094
          Length = 836

 Score =  835 bits (432), Expect = 0.0
 Identities = 435/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgaagctacttctatggctccacttattgttgctacacaaatgtggtcccagagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctgtgaagctacttctatggctccacttattgttgctacacaaatgtggtcccagagct 652

                                                                       
Query: 61  agcagcatgtggatcacttgagtgctttttgggaatggtgaactatgaccctgccttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agcagcatgtggatcacttgagtgctttttgggaatggtgaactatgaccctgccttaga 592

                                                                       
Query: 121 atttctagggctggggcctagaagtcttgttgtaacacattatcaggattttgtttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atttctagggctggggcctagaagtcttgttgtaacacattatcaggattttgtttgttt 532

                                                                       
Query: 181 gaattgaagttgcagagttactggctgacagcaaacagattcctcatctattcccctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gaattgaagttgcagagttactggctgacagcaaacagattcctcatctattcccctccc 472

                                                                       
Query: 241 aaacatgtttatagcctttcccatttggtaatgggagaactccaatttgatgtgttttaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaacatgtatatagcctttcccatttggtaatgggagaactccaatttgatgtgttttaa 412

                                                                       
Query: 301 agattttatttttaaagttttgtttatgaatatgtgtctttgttagtatatgctttgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agattttatttttaaagttttgtttatgaatatgtgtctttgttagtatatgctttgagt 352

                                                                       
Query: 361 gtctgtatctatagagccgttagagggtaaagggttagagttacaggcatttgtgagcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtctgtatctatagagccgttagagggtaaagggttagagttacaggcatttgtgagcta 292

                           
Query: 421 cctaacgtggatgcag 436
           ||||||||||||||||
Sbjct: 291 cctaacgtggatgcag 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information