BAC Information

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BAC

Clone NameMSMg01-454O02
ChromosomeX (Build37)
Map Location 87,107,713 - 87,108,194
singlet/doubletsinglet
Overlap genenone
Upstream geneEG436213, LOC667919, LOC100041727, LOC667934, Pet2, EG629419, 4932429P05Rik, LOC633246
Downstream geneNanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615, LOC629471, LOC100041815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454O02.T7 (MSMg01no454_o02.b1)MSMg01-454O02.TJ (MSMg01no454_o02.g1)
ACCAG541552AG541553
length738714
length of high quality
(start - end)
483 (73 - 555)---
definitionCHROMAT_FILE: MSMg01no454_o02.b1 PHD_FILE: MSMg01no454_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:13 2005CHROMAT_FILE: MSMg01no454_o02.g1 PHD_FILE: MSMg01no454_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCCTTCATTGCTGAACTACAATGTGGAAGTGTAAGCCAAATAAAC
CCTTTTCTCCCCAAGGTGCTTTGGTCATTATGGTTTGTTATAGCACTAGT
AGCACTAAGACACAGAAAATTAACTAATGCAACCTGATATTATATCATGA
TATTTTTTTTCTGGTAATATTGGCAAGTCATATGCTGCATACTATTGGTG
TGCTCTATAGCGAACTGTAAGCAGGAAGATATAATTGATATTGTTCTATT
TCTAGAAGAAGAAAATGTATGTCTCATGGAGTACAGGAGAAAAATGCCAT
TTGCTTTCTATTAACAATTTTTCCAACAATATTATATTAATAAGTAGAAA
TGATAATTTTCATTGAAGTGGTGAATCATGTTATTTGATACATTTCCTGA
TATTTGAAATGTACACAATAGATTAGAGTTTTCTGGGACATATCATATTT
TTATAAACTAATTCTATAAATGCACATTTAAATAATAAGTATTTATATTT
TTATAAGACACTTCCTAATTATAAATGTTTTACCAACAATTTATATTCCA
TGGATTTAAATTTTTCTTTAAAACTGTAGTAACAAATATATTGGCTTCTT
TCTGGATTTGAAACCGTGACACATTTTTAAAGTCAGGTCAACATTAACCA
ATAAATTATTTTAGCCACCAGCTTACTTTTTGTACTAN
CCATAAAANNNAAACCCGNNNCCCCCTGCTTCCCACTAAGNGGGCACATT
AAATCCCCACAAAAACCCACCTTTCCCAAAAATATTACAAAAAANNNNNN
AATTTTCACCAAAATTTTTTTTTCCCCCCCACCAAAACACCACCCNTTTT
TCCTTCACTTTTTATATACCGATTAATNACACAATTCTGATTTCACACAC
CNCCCCCCCCCACCCCATCNAAAAACATGCCACNANNAAAACTTAGCCCC
CACCTTACCACTTTTAACNCCCCCATCCCCCTTCCCCCCCCCTTTTTTTT
TTTAANCACCCCCCCCCCCCNCNNNNCCCCCCCCCCCCCCCNCCCCCCCC
CCCCCNNNNCCCCCCCCCCAACTACNNNNNNTCCNNNCCNCCCCCANAAC
CCNNNNCCCCCCCCCCCNTCCATTTTGGGTACTCTTTATATNTCGGNNNC
CCCCCNCNCCCCCCNNNNCCCTCCCCCTCTCCCCCCCCCCCTCCCCCCCC
CCCCCTTTCCTCTCCTTCCCCCCCACCCCTCTTCCCTCCGGNCCCNCCTT
TCTTCCCATTTTTATACGGGGGGGGGGGGGCCTCCNNNNNNNCCCCCCCC
CCCCCACCCACTAACCCCCCCCCCCTCNTTTCCCCNCTTACCCCCCCCCT
CCCTCTCCNCCCCCCTCNTNCTCCCCTTCTCCCACCACCCGTTTTTTTTG
NCCGCCCGCCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_o02.b1 MSMg01no454_o02.b1 CHROMAT_FILE:
MSMg01no454_o02.b1 PHD_FILE: MSMg01no454_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:13 2005
         (483 letters)



>mm_chrX_87107513_87108394
          Length = 882

 Score =  895 bits (463), Expect = 0.0
 Identities = 478/483 (98%), Gaps = 1/483 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaatgtggaagtgtaagccaaataaacccttttctccccaaggtgctttggtcattatg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatgtggaagtataagccaaataaacccttttctccccaaggtgctttggtcattatg 260

                                                                       
Query: 61  gtttgttatagcactagtagcactaagacacagaaaattaactaatgcaacctgatatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgttatagcactagtagcactaagacacagaaaattaactaatgcaacctgatatta 320

                                                                       
Query: 121 tatcatgatattttttttctggtaatattggcaagtcatatgctgcatactattggtgtg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcatgat-ttttttttctggtaatattggcaagtcatatgctgcatactattggtgtg 379

                                                                       
Query: 181 ctctatagcgaactgtaagcaggaagatataattgatattgttctatttctagaagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctctatagcgaactgtaagcaggaagatataattgatattgttctatttctagaagaaga 439

                                                                       
Query: 241 aaatgtatgtctcatggagtacaggagaaaaatgccatttgctttctattaacaattttt 300
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 440 aaatggatgtctcatggagtacaggagaaaaaggccatttgctttctattaacaattttt 499

                                                                       
Query: 301 ccaacaatattatattaataagtagaaatgataattttcattgaagtggtgaatcatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccaacaatattatattaataagtagaaatgataattttcattgaagtggtgaatcatgtt 559

                                                                       
Query: 361 atttgatacatttcctgatatttgaaatgtacacaatagattagagttttctgggacata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttgatacatttcctgatatttgaaatgtacacaatagattagagttttctgggacata 619

                                                                       
Query: 421 tcatatttttataaactaattctataaatgcacatttaaataataagtatttatattttt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 tcatatttttataaactaattctaaaaatgcacatttaaataataagtatttatattttt 679

              
Query: 481 ata 483
           |||
Sbjct: 680 ata 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space:   412456
Effective search space used:   412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)