BAC Information

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BAC

Clone NameMSMg01-455B06
ChromosomeX (Build37)
Map Location 33,361,153 - 33,505,512
singlet/doubletdoublet
Overlap geneDock11
Upstream geneLOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585, LOC100039497, EG210457
Downstream geneIl13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455B06.T7 (MSMg01no455_b06.b1)MSMg01-455B06.TJ (MSMg01no455_b06.g1)
ACCAG541703AG541704
length735741
length of high quality
(start - end)		641 (67 - 707)567 (77 - 643)
definitionCHROMAT_FILE: MSMg01no455_b06.b1 PHD_FILE: MSMg01no455_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:29 2005CHROMAT_FILE: MSMg01no455_b06.g1 PHD_FILE: MSMg01no455_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:29 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(33,361,153 - 33,361,793)(33,504,946 - 33,505,512)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGATTCCTCCCTGGGGCAGAGGTAGATAGATGCAGAGAGTCAC
TGAGGCTGTTAGATAAGACATTAAGGAACACAGCAGAAGAGCTTCTGGAG
CCTCAGGAGAGCAAAGCCATAGCCAAGCTGTGAAAGTGGAGGATGGAGAA
ACAGCTAATAGGCAGCTCAAGCTGGACACTTCAAGCAGAGGGGACTAAGC
TGTGCTGAAGCTTATGGGATATAGAGAGTTCTCTGTTTTTGACATAAACC
ACGTGGTCAGGTTGCAGTTCCCAGAGTTTGTAACTCTTGTCATTAAAATG
ATAGGGCCTGTCTTTTTATAGGGGCCAGATAAGCGTATCCCACCTTTCGA
TGTATTCACAAAGTTCTGGGGCCTGATTTTTTTCTGATATACTTTTAATA
AGCCATTGTAGTCATATATTCCAGTCTATTTGATATGTTTTAGGTGCTAC
TCTTGTAGTTTTACAGTCTGTGCTTGCTTGTAGTTGGTGCTGTACAGGTG
ATGGTGTCTATGTGTACAAATAAGATGTAAATGCATCCTGTCTCTGTATT
TCTATTAAAAATTGAGCCAAATGCTGCTTGGTAATATGCAGCCACCCAGA
GCAAGACATGGAAAAACTTAAAGCAAGGCACAGCCTGATCTTCACAGATA
TATTGGAAGTTTAGCAATTATAACTTGTTGTCTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTCCAAATAATTTTGTGAAA
TATTCTTTATGAGGGAAATTCTAAGAGCCATACACTACACATTTTTCCTG
TTCTTGATACCAATATCAAATGGAGAAAAGCCTTAGTTCATTACATTCAG
CATTCTTTATATTGTGAATATTCATTAGCACTAGATCGCAGGTGTACTTA
ATGGATCCAGAGAATACTGAAATTATTGCTAGGTATTATCTAATTTATCC
ATGGTGAACAGCAAGATGAAAGGACTGAGGAAAAGATATATACACTCAGC
CCCATGCTATTAACAGTCTTATGAAATGAAGATTCAGTTAACACACATGT
TCAACGTGAATAAGACAAATCTAAAACAATCTCGATCAAGTTTGAATTAG
AAATAGATCAATACCTGAACCTCTGAGTCGAAAGAAAAGAGATTCTGTCT
TCCGTCTCCTCTACTGAGTTTGTTCAGTTGTTCTGTTTCTCTGCCATACT
AAAATGTAAAAAGCCATAATGTTGCTACATTTCCTTCAAAACAATGCTAA
ATACCAGTTAGCCATGTCATTTATACAGCTTCATCACTGCTGTATTACAT
TATTGAGACTCATAATAAGAAACAAATCTGATCTTTATATATTTCCATAA
GATCTAAAATATTCTACATTTAGTACTCCAGGTAAAAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_b06.b1 MSMg01no455_b06.b1 CHROMAT_FILE:
MSMg01no455_b06.b1 PHD_FILE: MSMg01no455_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:29 2005
         (641 letters)



>mm_chrX_33360953_33361993
          Length = 1041

 Score = 1224 bits (633), Expect = 0.0
 Identities = 639/641 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggggcagaggtagatagatgcagagagtcactgaggctgttagataagacattaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggggcagaggtagatagatgcagagagtcactgaggctgttagataagacattaagg 260

                                                                       
Query: 61  aacacagcagaagagcttctggagcctcaggagagcaaagccatagccaagctgtgaaag 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcagcagaagagcttctggagcctcaggagagcaaagccatagccaagctgtgaaag 320

                                                                       
Query: 121 tggaggatggagaaacagctaataggcagctcaagctggacacttcaagcagaggggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaggatggagaaacagctaataggcagctcaagctggacacttcaagcagaggggact 380

                                                                       
Query: 181 aagctgtgctgaagcttatgggatatagagagttctctgtttttgacataaaccacgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctgtgctgaagcttatgggatatagagagttctctgtttttgacataaaccacgtgg 440

                                                                       
Query: 241 tcaggttgcagttcccagagtttgtaactcttgtcattaaaatgatagggcctgtctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaggttgcagttcccagagtttgtaactcttgtcattaaaatgatagggcctgtctttt 500

                                                                       
Query: 301 tataggggccagataagcgtatcccacctttcgatgtattcacaaagttctggggcctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataggggccagataagcgtatcccacctttcgatgtattcacaaagttctggggcctga 560

                                                                       
Query: 361 tttttttctgatatacttttaataagccattgtagtcatatattccagtctatttgatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttttctgatatacttttaataagccattgtagtcatatattccagtctatttgatat 620

                                                                       
Query: 421 gttttaggtgctactcttgtagttttacagtctgtgcttgcttgtagttggtgctgtaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttaggtgctactcttgtagttttacagtctgtgcttgcttgtagttggtgctgtaca 680

                                                                       
Query: 481 ggtgatggtgtctatgtgtacaaataagatgtaaatgcatcctgtctctgtatttctatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtgatggtgtctatgtgtacaaataagatgtaaatgcatcctgtctctgtatttctatt 740

                                                                       
Query: 541 aaaaattgagccaaatgctgcttggtaatatgcagccacccagagcaagacatggaaaaa 600
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 aaaaattgagccaaatgctgcttggtaatatgcagccaaccagagcaagacatggaaaaa 800

                                                    
Query: 601 cttaaagcaaggcacagcctgatcttcacagatatattgga 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttaaagcaaggcacagcctgatcttcacagatatattgga 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no455_b06.g1 MSMg01no455_b06.g1 CHROMAT_FILE:
MSMg01no455_b06.g1 PHD_FILE: MSMg01no455_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:29 2005
         (567 letters)



>mm_chrX_33504746_33505712
          Length = 967

 Score = 1050 bits (543), Expect = 0.0
 Identities = 561/567 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcctccaaataattttgtgaaatattctttatgagggaaattctaagagccatacact 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 767 actcctccaaataattttgtgaaatattctttatgagggaaattctgagagccatacact 708

                                                                       
Query: 61  acacatttttcctgttcttgataccaatatcaaatggagaaaagccttagttcattacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acacatttttcctgttcttgataccaatatcaaatggagaaaagccttagttcattacat 648

                                                                       
Query: 121 tcagcattctttatattgtgaatattcattagcactagatcgcaggtgtacttaatggat 180
           |||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 647 tcagcactctttatattgtgaatattcactagcactagatcacaggtgtacttaatggat 588

                                                                       
Query: 181 ccagagaatactgaaattattgctaggtattatctaatttatccatggtgaacagcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccagagaatactgaaattattgctaggtattatctaatttatccatggtgaacagcaaga 528

                                                                       
Query: 241 tgaaaggactgaggaaaagatatatacactcagccccatgctattaacagtcttatgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tgaaaggactgaggaaaagatatatacactcagccccatgctattaacagtcttatgaaa 468

                                                                       
Query: 301 tgaagattcagttaacacacatgttcaacgtgaataagacaaatctaaaacaatctcgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgaagattcagttaacacacatgttcaacgtgaataagacaaatctaaaacaatctcgat 408

                                                                       
Query: 361 caagtttgaattagaaatagatcaatacctgaacctctgagtcgaaagaaaagagattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 caagtttgaattagaaatagatcaatacctgaacctctgagtcgaaagaaaagagattct 348

                                                                       
Query: 421 gtcttccgtctcctctactgagtttgttcagttgttctgtttctctgccatactaaaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtcttccgtctcctctactgagtttgttcagttgttctgtttctctgccatactaaaatg 288

                                                                       
Query: 481 taaaaagccataatgttgctacatttccttcaaaacaatgctaaataccagttagccatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 taaaaagccataatgttgctacatttccttcaaaacaatgctaaataccagttagccatg 228

                                      
Query: 541 tcatttatacagcttcatcactgctgt 567
           ||||||||||| ||||||||| |||||
Sbjct: 227 tcatttatacaacttcatcaccgctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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