BAC Information

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BAC

Clone NameMSMg01-456C24
ChromosomeX (Build37)
Map Location 153,100,111 - 153,100,491
singlet/doubletsinglet
Overlap genenone
Upstream gene4930503H13Rik
Downstream geneLOC640803, LOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456C24.T7 (MSMg01no456_c24.b1)MSMg01-456C24.TJ (MSMg01no456_c24.g1)
ACCAG542549AG542550
length765792
length of high quality
(start - end)		431 (46 - 476)381 (83 - 463)
definitionCHROMAT_FILE: MSMg01no456_c24.b1 PHD_FILE: MSMg01no456_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:55 2005CHROMAT_FILE: MSMg01no456_c24.g1 PHD_FILE: MSMg01no456_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTGGCATCCCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATACAAATCAAAACAATCCTGAGATT
CAACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAG
AAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTTCTGGGCA
TATATCCAGAAGATGTCCCAACAGGTAAGAAGGACAACTGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGAAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAATATGTGGTACATTTACACAATGG
AGTACTACTTCAGCTATTAAAAAGAATGAATTTATGAAATTCCGAGCCTA
ATCGAAGGACCTGGAGGGCATCATCCTGAGTGAAGGAACACATTCCCAAG
GAAACTCCCCCAAATGGACTTCCTGGATAGGGGAAATTAACCCCTAACCT
ATGATAACCCCGAATTTAGGAAACATTTTGCTAAAACCTGGGACTCCCCA
AGGAAGGAAAACCGGAGGGTGGGCCTAAATTCCCCCTTCTATAATTTGTG
ATACAAACCCCCCCG

CAACCCACCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGCTTTTAAAGAAGA
AATTAATACGTGTCATCATAAATTTCTTCTTGTGATTTTGGGAGCCTTTA
AAATTCATTTCAACAAGAAACTTGTGCTTGTACTTACAGAAACTTATGCT
TGTTCACCACATAGGTGTTCTTTAATTAGTATATTTAATTAGAAAAATTA
CTTTAACTATTTTTTTCTTTGGCCATTTTTCATTTGTGAAAAGGAAAATT
ACTTCTCATAAAATATTTAAAGTTTAACATGGTTTATTATTAAAAGTAGC
CTTACAGGAAAAGTTAGTAAAAAATCCAATAGTTTCCATATAAGCACAAT
TCTCTGTGATAAGACAGCCATACTCATTATCAACCTCCAACATTGGAGTG
CCACAATTATCATGTCTGATGAGTGACACTCATTTATTATTATTGCCCCA
AGTCCATAACTTATCTTTGGGAGAAAGGTCTACTCCTTTACACTCTTTTT
TTAATATAATAAAAATGGTGGACAAACTTTTGTCCTTTCTTTAAATGGTT
AAACTGGTAAAATCCCGCTTCCTTTTCATTTACTTTACAACCTGCTTTTT
CCCCTATATTTTTTCTTTCCTTAACACTCTTTTCCTTGCCTTTGTATTAT
AAAAATCTTCTTTTTCCCACTTCTACTTTTTCTTTGCTCGTGCTTTTCCC
CTCCCTGTTTCTCTTTCTTCCCTCTTATTATTTTTCCTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_c24.g1 MSMg01no456_c24.g1 CHROMAT_FILE:
MSMg01no456_c24.g1 PHD_FILE: MSMg01no456_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:55 2005
         (381 letters)



>mm_chrX_153099911_153100691
          Length = 781

 Score =  721 bits (373), Expect = 0.0
 Identities = 379/381 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgcttttaaagaagaaattaatacgtgtcatcataaatttcttcttgtgattttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tattgcttttaaagaagaaattaatacgtgtcatcataaatttcttcttgtgattttggg 522

                                                                       
Query: 61  agcctttaaaattcatttcaacaagaaacttgtgcttgtacttacagaaacttatgcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agcctttaaaattcatttcaacaagaaacttgtgcttgtacttacagaaacttatgcttg 462

                                                                       
Query: 121 ttcaccacataggtgttctttaattagtatatttaattagaaaaattactttaactattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttcaccacataggtgttctttaattagtatatttaattagaaaaattactttaactattt 402

                                                                       
Query: 181 ttttctttggccatttttcatttgtgaaaaggaaaattacttctcataaaatatttaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttttctttggccatttttcatttgtgaaaaggaaaattacttctcataaaatatttaaag 342

                                                                       
Query: 241 tttaacatggtttattattaaaagtagccttacaggaaaagttagtaaaaaatccaatag 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttaacaaggtttattattaaaagtagccttacaggaaaagttagtaaaaaatccaatag 282

                                                                       
Query: 301 tttccatataagcacaattctctgtgataagacagccatactcattatcaacctccaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tttccatataagcacaattctctgtgataagacagccatactcattatcaacctccaaca 222

                                
Query: 361 ttggagtgccacaattatcat 381
           |||||||| ||||||||||||
Sbjct: 221 ttggagtggcacaattatcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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