Query= MSMg01no456_d21.b1 MSMg01no456_d21.b1 CHROMAT_FILE:
MSMg01no456_d21.b1 PHD_FILE: MSMg01no456_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:00 2005
(468 letters)
>mm_chrX_121320848_121321716
Length = 869
Score = 176 bits (91), Expect = 3e-48
Identities = 160/183 (87%), Gaps = 3/183 (1%)
Strand = Plus / Plus
Query: 136 tgtttggggcctgctgacaaatcaagagggctcttttggctgataagagatatctgaata 195
|||||||| ||| |||||| ||| |||||| |||||||||| || | ||||| ||||||
Sbjct: 336 tgtttgggatctgatgacaagtcaggagggcccttttggctggtaggggatatttgaata 395
Query: 196 attcttgatcagatcaggactttctgaagaccca-ttgtttggacagagcatctttcagt 254
|||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||
Sbjct: 396 attcttgatcagatcaggactttctgaagacc-agttgtttgcagagagcatctttcagt 454
Query: 255 cttctactagaatgacaatgttt-gtgtcacatttcatagcaggagaatgatataatctt 313
||||| ||||||||| |||||| | ||||| ||||||||||||||| |||| ||||| |
Sbjct: 455 cttctgctagaatgagaatgttcagggtcacttttcatagcaggagattgatttaatcct 514
Query: 314 cct 316
|||
Sbjct: 515 cct 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space: 393422
Effective search space used: 393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_d21.g1 MSMg01no456_d21.g1 CHROMAT_FILE:
MSMg01no456_d21.g1 PHD_FILE: MSMg01no456_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:00 2005
(420 letters)
>mm_chrY_1656939_1657758
Length = 820
Score = 255 bits (132), Expect = 3e-72
Identities = 352/442 (79%), Gaps = 46/442 (10%)
Strand = Plus / Minus
Query: 1 tgaccaagagtaagctaatacactatataaagc-tgtactgagaagcattaagaaggcag 59
|||||| || |||||||| |||||| ||||||| | |||||||||||||||||| |||||
Sbjct: 445 tgaccaggactaagctaacacactacataaagcat-tactgagaagcattaagatggcag 387
Query: 60 gtatctcactctgaacagggctaaggttgtttc-gactgtattggctttattcttctgga 118
||| | |||||||| ||| |||||||||||||| | ||||||||||||||| |||| ||
Sbjct: 386 gtaccacactctgaccagcgctaaggttgtttcag-ctgtattggctttatccttcaggg 328
Query: 119 gattcttgtcaggaattgcgagcat---t--taccaga-ccacaacaggaaaccttccat 172
||||| ||||| ||| || | || | || |||| |||||||||||||||||||||
Sbjct: 327 gattc-tgtca-gaaatg---g-atacctgatatcagatccacaacaggaaaccttccat 274
Query: 173 atgtctc-ctttggtgtctgggcataggatatgtgagatgcatcaagactgattaaaggt 231
||||||| |||| | ||||||||||||||||| |||||||||||| || |||||||| |
Sbjct: 273 atgtctctcttt-gagtctgggcataggatatatgagatgcatcaggaatgattaaactt 215
Query: 232 catgttccctagatgt-------ttttctgtttccaggaatacgatgatatacaaaaggt 284
|||||||||||||| | |||| |||| || | ||||||| || |||||
Sbjct: 214 catgttccctagatatgaaaccatttt-------cagggatcctatgatatccacaaggt 162
Query: 285 cagctccagaatacatagcatcaggtctttcttggccaatt--aaaattggagccaaaat 342
|||||||| | ||| ||| |||| ||||||||||||||||| |||||| || |||| ||
Sbjct: 161 cagctccatactacgtagaatcatgtctttcttggccaattcaaaaatt-gacccaacat 103
Query: 343 ctcaagagacaatg--tatgtattggaca---gacttgctgctatcacacaggtcgtggc 397
|| || | |||| | | |||| || || |||||||||||||| |||| |||||
Sbjct: 102 cttaa---aaaatgactttctatt---caatggaattgctgctatcacaaaggtagtggc 49
Query: 398 ttcaatttccagcaattacatt 419
||||| | | ||||| ||||||
Sbjct: 48 ttcaagtgcaagcaaatacatt 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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