BAC Information

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BAC

Clone NameMSMg01-457L16
ChromosomeX (Build37)
Map Location 12,452,200 - 12,452,443
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043945, Bcor, 2900008C10Rik, LOC385323, LOC100043946, LOC628441, Atp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2
Downstream geneLOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457L16.T7 (MSMg01no457_l16.b1)MSMg01-457L16.TJ (MSMg01no457_l16.g1)
ACCAG543726AG543727
length778760
length of high quality
(start - end)
244 (72 - 315)403 (85 - 487)
definitionCHROMAT_FILE: MSMg01no457_l16.b1 PHD_FILE: MSMg01no457_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:03 2005CHROMAT_FILE: MSMg01no457_l16.g1 PHD_FILE: MSMg01no457_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGA
ATTCATTTTTCTTGCATTTTTAAATATTGATTTTGTTTTGGATGATGCTC
TATGTGTGAGGGAGGAGGTGTACACATGGAATTGGTATTCCGGGCAGATG
TGACCCACTGGATTTGGGGGGTGGAAAGCACTCAACCACTGAGCCACCCA
TCTAGCCAGCATTTATTATAAGGCAAGAACTCTGCTAACTGAACTACATC
TCCGGTCCGTCTTTTGTATGTTTTTAATTAATTAATTAATTAAAAATATT
TTGAAAGAGGGTCTCTTTTTTTTTCTCCAGCTCTCCTGTAACAAACATCC
ACCTGTTTCTGCCTCCTGAGGGCTGATATTAAAGGCTTGTGCCACCATGT
TTGTTTATCTTTTCCCATCTGATAGATTTACTCTCTTCTATCCTTCATCC
TGATATGTGACTTTCTCATGTCATCCATTCTCCTTATCCTCTCTTTTTCT
TCTCCCTCTCTTCATATTTTTTTTTCCTCTTCTTTCTTTTTTCCTTTCTT
ATTCTTTTCTTCTATTTTCTTTTCTTTCTTTATTTGCTTACGTCTTTTTA
TTCATTTTCTCCTTTTTCTAATCTTTCATTATAATACCTATTACAACTCT
TTTCATTATATTCATTTTTTTTTTTTACCATTTATCTCTCTCTTGTTGTT
TTTCAATTTTTTTTTTTCTCCCTCATATCATGCTTCTATTTTCTTCTTTA
TTCCTTTTCATTTTTCTTCTTTTTTTCN
CAAAAAACCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTACCAGGAAAC
GTTACAGACACGGGTTCCACACAGAACAACTGAAACACAGGGCAAGACAA
AAAGAGCCAGAGGAGGAGGGAGGAGAAGCCAGAAGATTAGAAAAGATGGC
TACAGTTAGTTTTAGGCTAAGCAGAGCAACTCAATAAGCAGCAAAAAGAA
GCTAGTTTGAGTCTGTCAGCTTGGAGAAGAGTTTTGAGTCAGAACAGCTG
ATCTGAACCAGGAAGCCAGAGCTCAGAAAGAGCTATTTTGGGTGAGCTTA
TTCAGCAGTAAGTCTCACAGGCTGAAAACATTCTAGGCCTGGATTCCATT
GTATGGAGGCTAGAAGCTTCCAGGACTAGGCCTAGGTTAGCAGATGGAGA
CAGTAAGCCTTTAAGACAACAACTGAGCCAGGGGAATAAAAGATACTTTT
ACTAGTCCGCCATTCACAGAATTGGTCCGTCCCCTCTTATTAATTGACCA
AATTTAAAATGGGTGGAGATACCCTTATTATCTCCTTTGTCAACAAATGG
TATGGTATATTTTTAGGGGAAAAAATTGGAGGGTAACTTTATATTTTTTT
TACCGGTTTTTTATTATTTCTTCCCTTTCTTTTTTCATGTGGTGTTCTGC
CCCTTAGGTCTTATACACAGCGTCCCTTTCGTGTTTCAATTTAAAATAAC
ATTTTTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_l16.b1 MSMg01no457_l16.b1 CHROMAT_FILE:
MSMg01no457_l16.b1 PHD_FILE: MSMg01no457_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:03 2005
         (244 letters)



>mm_chrX_12452042_12452685
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatattgattttgttttggatgatgctctatgtgtgagggaggaggtgtacacatggaa 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aaatactgattttgttttggatgatgctctatgtgtgagggaggaggtgtacacatggaa 343

                                                                       
Query: 61  ttggtattccgggcagatgtgacccactggatttggggggtggaaagcactcaaccactg 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 342 ttggtattccgggcagatgtgacccactggatgtggggggtggaaagcacccaaccactg 283

                                                                       
Query: 121 agccacccatctagccagcatttattataaggcaagaactctgctaactgaactacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agccacccatctagccagcatttattataaggcaagaactctgctaactgaactacatct 223

                                                                       
Query: 181 ccggtccgtcttttgtatgtttttaattaattaattaattaaaaatattttgaaagaggg 240
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ccgggccttcttttgtatgtttttaattaattaattaattaaaaatattttgaaagaggg 163

               
Query: 241 tctc 244
           ||||
Sbjct: 162 tctc 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)