BAC Information

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BAC

Clone NameMSMg01-457M24
ChromosomeX (Build37)
Map Location 89,232,494 - 89,232,767
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087
Downstream geneMageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457M24.T7 (MSMg01no457_m24.b1)MSMg01-457M24.TJ (MSMg01no457_m24.g1)
ACCAG543790AG543791
length807758
length of high quality
(start - end)
277 (52 - 328)318 (83 - 400)
definitionCHROMAT_FILE: MSMg01no457_m24.b1 PHD_FILE: MSMg01no457_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:10 2005CHROMAT_FILE: MSMg01no457_m24.g1 PHD_FILE: MSMg01no457_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNCCATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATATGTATTCTAAAAACTGGGCTTTTGGCCTGCATGAGA
TGAGCTAGCAGAAAGTGATAGCAGTTCTTTTAGAGTTTTTCTCTAGAGAG
AGCTGAGCTGTATGGAGATCTCTGGAGAGTGAAAACAGCTCTTCAACAAT
TTTTCTAATGGGATTTTTGACTTGGTCAGAAGATCCAATATTTTTTTTAC
AGCAGCTTTTCTGACTTAGGTCAGAAAACCCATGAGCTAGCCAGAGATAT
TTTTGGATAGAAAGAGAGAACTGCTTGGTTTTATTGACACAAGCAAGCAG
GACGTGGACAGAGAATTCTCACAGAATAGCAAGCAAGCAGAATATACACA
GATCTCCACTGAGAAAGCAAACCCCGAGAGAAGCAGACTGCAAAAGTTGG
ATTAAGAAAAACCCGGTTGGTAGCTTAACCCACAATGGGACTTTAAAACC
TTTTTTTCATGGGCTCCCAAAACCCCCTTTTTCAAAAACTTTCTCCTAAC
AAGTCTGGGCATTGGGAAAAAAATAAAATTGTTTTTTGTTTGCTATTTTG
GGCCCCCCCCCACCCCCCTAAAAAAATCCTCCTATTCCTCAATCTTTTTG
TGGGAGGAGATATTTTTTTGTGCCTTCTCAGAGAAAAACCTCCACCCGGA
AAAGAGGGGGGTTTTTTAATAAACTCCAGCTATATTTTCTTTTTCCCTCT
CTCTTTGAGTTTCCTTCTCCTCCTTTTATTTTGGTCCTTCCTTTTCTCCA
CCTAATC
CATTTTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGA
ATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGA
AATGCAAATCAAAACAGCCCTGAGATTCCATCTCACACCAGTCAGAATGG
CTAAGATAAAAACTTCAGGTGACAGCAGATGCTAGAGAGAATGTGGAGAA
AGAGGAACACTCCTCCATTGCTGGTGAGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGACTGGCGGTTCCCCAGAAAATTGGACATAGTACTACCGG
AAGATCCCACAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACC
GGNAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGTTGGAAGAACCCAGATGCCCCTCACAAAAGAATGTATACCG
AAAAAGGGGATATTTTCCCAAGGGAGGAACACTCCCCTTTTAAAAAAAGG
AATTTATGAAATCCCTAGGCAAAGGGGTGGGCCTGTGGGGAATCACTCCG
GGGGTGGGGACCCCCCCCCCCAGGACCCTCCCTTGTAATTTTTTTCTTGA
TATTGTGTTTTCCCACTCATTTCTTATTCTTTCTTTCCTTATTCCTTCTG
CTTTCCTTTTTATTCGCAATATTGTTTCGTTTTCTCTTTCCCCTCTCTTT
TCTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_m24.b1 MSMg01no457_m24.b1 CHROMAT_FILE:
MSMg01no457_m24.b1 PHD_FILE: MSMg01no457_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:10 2005
         (277 letters)



>mm_chrX_89232290_89232967
          Length = 678

 Score =  487 bits (252), Expect = e-142
 Identities = 269/276 (97%), Gaps = 5/276 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatgta--ttctaaaaactgggcttttggcctgcatgagatgagctagcagaa 62
           |||||||||||||  |  |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgtaact--taaaaaatgggcttttggcctgcatgagatgagctagcagaa 262

                                                                       
Query: 63  agtgatagcagttcttttagagtttttctctagagagagctgagctgtatggagatctct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtgatagcagttcttttagagtttttctctagagagagctgagctgtatggagatctct 322

                                                                       
Query: 123 ggagagtgaaaacagctcttcaacaatttttctaatgggatttttgacttggtcagaaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggagagtgaaaacagctcttcaacaatttttctaatgggatttttgacttggtcagaaga 382

                                                                       
Query: 183 tccaatatttttttt-acagcagcttttctgacttaggtcagaaaacccatgagctagcc 241
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tccaatatttttttttatagcagcttttctgacttaggtcagaaaacccatgagctagcc 442

                                               
Query: 242 agagatatttttggatagaaagagagaactgcttgg 277
           ||||||||||||||||||||||||||||||||||||
Sbjct: 443 agagatatttttggatagaaagagagaactgcttgg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 678
Length adjustment: 9
Effective length of query: 268
Effective length of database: 669
Effective search space:   179292
Effective search space used:   179292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)