BAC Information

Click to search

BAC

Clone NameMSMg01-457N13
ChromosomeX (Build37)
Map Location 126,186,044 - 126,186,513
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
Downstream geneDiap2, LOC100040092, LOC665773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457N13.T7 (MSMg01no457_n13.b1)MSMg01-457N13.TJ (MSMg01no457_n13.g1)
ACCAG543816AG543817
length7651,761
length of high quality
(start - end)
457 (45 - 501)---
definitionCHROMAT_FILE: MSMg01no457_n13.b1 PHD_FILE: MSMg01no457_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:13 2005CHROMAT_FILE: MSMg01no457_n13.g1 PHD_FILE: MSMg01no457_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCTTTAACTATACAAAGAAGTTCTGATGTTGGATAGCCGTAATATAC
ATACAGGTGAACTTTACCCTAGAAACAAACTCCAAACTAAGTTCATTAAA
GATTATTATAACCATTTTGGTGACTCTGAGTATATGACATTGTATGGTAA
TTTGTAAACATTTAAATACCAATAGAATTCTTGAGATAAATTCTTAAATA
TCCATGTCTTAATTTTGTCTATGGTTACTTCTTGTGATAATTAGTCTTAA
TTGTCAGTATCATTAGATATATAATTACCATGGAAACATATCTGTGGATG
TGCCTAGGATGCTGTTTCCATAACGTTTTACTGAAGAGGAAAAACCCACT
CTGAACTCCAAGTGTGGGGTCCTAGACTGAACAAAAAAAAAACAAAACAG
AGCACCAACCTTTTCCCCCATCTGTCTACCTCTGCCACTATCTCTGTCTC
TTTCTGGCTTTCTCTGTCTCTCGATGTCTGTCTCTGTGTGTGGCTGTCTC
TGGCTCCCCATCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTTAAACAC
CCCCCCNAANNANANATAGANAGATAGAGAGACCCCCCCNCATGGCTTTC
CTTTAAAAAGGAAAATACCCCTTGAAAGGGTGGGCCAAGAAACCTCCCTT
CCTTTGCTTCTTGGTCGGGAATTAGTGGGCCCCCACCCCGGGTAAAATAA
TAACACTACCCCTTT
TTTTTTTTTTTTGTATAGAGAGAAGAAGAGNAGAGAGGGGGAGGAGTCAA
AGTAAAGAAGNGTGNTGGTGGTGTCTCTCTCTAGATAGTGTAATATGTTG
GGAGGTCGCTGTCTACTGAAGAGAGTGTGTCTCCTCCCGTGAAGAATATT
AGTGTCACAGTAAGGCTTTCTAAACCCAGCGACCAACCGTGGTCTATTCG
CTGTATACAACGAAGTAGAGGTGCAAAGTGAGTTAGCAGATGCATGCCAT
TATGAGAGGCCCGAGCAGCGACTGACAAACACAGAGTAGATATCGATAAA
CCTGGCTCTGCGTATGTCCACCGGGGCACGACGCNCACATAGTCGTAGAT
GTGGTGCGACGGTCGACACAGAGAGCTCCGAGCGGCGTATGTGATAGCCC
GCTCTCCACGCCGCAGCTCCTCGTTGTTCCACTCCTCCGTTCCTCTCTCA
TTTCTCGGCTATCCGCGCGCGACTCACAGTTCGGCTGTGAGAAGAGGNAA
CTGAGGAGGCGGATCGCTATATATCAATCGTCCATACAGCGCCACTTGCA
GATGAGCCATGCGATCGCGCGTTACATATGTCACCGTACTCTAATGCCAC
GCGGTTTATAGTGTCTCAATTATGATAATGTCCACGTACCTGTCTCGATC
ATTCTCGTGTGCTGCGTGCTGCTGGGTAGTTCGTTGTGTATGATAGGACG
TGGAGTATGTGTGTAGATATGATGTGANTATCTGATAGCACTCGACGCCC
GGTGGATTATATATGATGACATTAGCGATGATATTAACGACTATGATGTG
TCCGTGCTGTGCGCGCTCCCCCTCTCTCTTCTTTATCTTCTCTCTTCTCT
TACATCTAATTATTNATATCTCCNCATCCTCTCATTGCATAATAGTCGAT
AAAACACACTTAGATTATATATTAAAATAATAGAGTGGGTGCGATGGATC
GACGTGATGCAGCGCGAGGNGTTATCCACGACGAGCGTACATACACACAT
ATATAATATCGGACGTCACACGCGATGCAATTAATTATTAATATCTATTT
ATACATATGCATCGTATATACATAATATGCCACGCTACGTGTGATATTAA
TACTAGTTGGGTGATGATATGATATAATGAGCTACTTGTATATTTGCGCC
TGGACGAGTACNGTACANTAGAGATGGATCTGACACTCGCGACCAGAGCG
CGTANTACACGATGGTGCTGCGAGAGCACTCGACTAGACAGATAGCAATA
TACTGATAGNAAAGATGAGAACCAATGCATGCAGGACTCGAGCGTGCTAN
GATAATTATATATACANAGAGAGAGACGACNAGAGCGTGCGCGTACTGAT
ATGAGTATCATATTTNATACNCTCGCATCAGCACTCACGACCCTGTGACG
TTGAGATCGAACACGTGCTGGACATGCACTATGCGTACATGAGAGTGCTA
TGGTCGAGTGTCGTGCACACGTTANGTCAGTCGCATCGCGATGCTGCGCT
GCTCGCGTCGCNGCATNGCGTGGCGCGCGAATGTATGCAATTCCNNTCTT
ACGGAATNTAANAGTATGATCCNTATCACATCCCTGCACGTCATACNTAT
TTAATTATAACGTGAGTACCGCAGNAGGCGNANAGTGATGAGGACACAAA
GATGAGGATGTAGACGCGTATCTGTGAGGGTAGGTATGGCGTATAGTATG
ATGTTGCGCGTTGTGCGTATGACTCTGATTCCTCTCTGATATNCTATCAC
TCTCACTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_n13.b1 MSMg01no457_n13.b1 CHROMAT_FILE:
MSMg01no457_n13.b1 PHD_FILE: MSMg01no457_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:13 2005
         (457 letters)



>mm_chrX_126185839_126186696
          Length = 858

 Score =  816 bits (422), Expect = 0.0
 Identities = 450/470 (95%), Gaps = 18/470 (3%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttaactatacaaa-gaagttctgatgttggatagccgtaatatacatacaggt 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttaactatacaaaagaagttctgatgttggatagccgtaatatacatacaggt 265

                                                                       
Query: 65  gaactttaccctagaaacaaactccaaactaagttcattaaagattattataaccatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaactttaccctagaaacaaactccaaactaagttcattaaagattattataaccatttt 325

                                                                       
Query: 125 ggtgactctgagtatatgacattgtatggtaatttgtaaacatttaaataccaatagaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggtgactctgagtatatgacattgtatggtaatttgtaaacatttaaataccaatagaat 385

                                                                       
Query: 185 tcttgagataaattcttaaatatccatgtcttaattttgtctatggttacttcttgtgat 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 386 tcttgagataaattcttaaatatccacgtcttaattttgtctatggttacttcttgtgat 445

                                                                       
Query: 245 aattagtcttaattgtcagtatcattagatatataattaccatggaaacatatctgtgga 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 aattagtcttaattgtcagtatcattagatataaaattaccatggaaacatatctgtgga 505

                                                                       
Query: 305 tgtgcctaggatgctgtttccataacgttttactgaagaggaaaaacccactctgaactc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgtgcctaggatgctgtttccataacgttttactgaagaggaaaaacccactctgaactc 565

                                                                       
Query: 365 caagtgtggggtcctagactgaacaaaaaaaaaa-----------------caaaacaga 407
           ||||||||||||||||||||||||||||||||||                 |||||||||
Sbjct: 566 caagtgtggggtcctagactgaacaaaaaaaaaaaaaacaaaaaaacaaaacaaaacaga 625

                                                             
Query: 408 gcaccaaccttttcccccatctgtctacctctgccactatctctgtctct 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gcaccaaccttttcccccatctgtctacctctgccactatctctgtctct 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space:   379056
Effective search space used:   379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)