BAC Information

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BAC

Clone NameMSMg01-458H16
ChromosomeX (Build37)
Map Location 83,574,209 - 83,574,540
singlet/doubletsinglet
Overlap geneEG436212
Upstream geneMap3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852
Downstream geneGm41, EG629374, EG637027, Il1rapl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458H16.T7 (MSMg01no458_h16.b1)MSMg01-458H16.TJ (MSMg01no458_h16.g1)
ACCAG544299AG544300
length746763
length of high quality
(start - end)
244 (84 - 327)333 (324 - 656)
definitionCHROMAT_FILE: MSMg01no458_h16.b1 PHD_FILE: MSMg01no458_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:05 2005CHROMAT_FILE: MSMg01no458_h16.g1 PHD_FILE: MSMg01no458_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCNGACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCANAATC
AGCCGCGGAATTCTCTGGNGTACCTAAAAAAGGTCACTTAGATATATTAT
CATATCATCTACAAATAGTGATACCTTGACTTCTTCCTTTCCAATTTGTA
TCCCCTTGATCTCCTTTTGTTGTCTTATTGCTCTGCCTAGAACTTCAAGT
ACCATATTGAATAGATATGGGGAGACTGGGCAGCCTTGTCTAGTTCCTGA
TTTTAGTGTTATTACTTCAAGTTTCTTTCCATTTAGTTTGATGTTGGCTA
TTGGTTTGCTGTTTACTGCTTTTATCTTCCTTTTGTATGTGCCATGAATT
CTTGAAAGGACTACAGTATCACAGGCATTAAAATCAACAGTAATAAAGGC
ATCTTCTTGAAATGTAAAATATTCTGCACAGTAAAGGACAACAGTGGGTG
GGACCTTTCCACATCAATCACTAATCAAGACAATGGCCTACAGACTTACC
TACAGACCAATCTTATGGAGACATTTTCTCAATTAAGATACCCTTTTCCC
ATACATGTCTAAATGAAATATACAAAAGCTATAAGAACATAAATATATCA
AGAANACAATCTAATTAAAAACAGGTCATGAAACTAAACAGAGAGTTCTG
AAAATATGAAATCCTAATGTTTGATAAACATATTTGAGAGGCCCTTGGTC
CTGTTTAAGTTTTAATGCCCACTGTAAGTGAATGCCAGGTCCCCGG
CGATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCAGAAATTCTCAGTGAGCCTATGTCATCTCTTAGAACT
GAGTANACCATGAAGAGTTTTGAGGGCTCAGGTATTCTTTCCTTTCATCC
TAAGGACCCCTGGGAGGGAATGAGAGCATTAGATGGAGTTAATCCAAAAT
GAGTGCTGCATAAGGAAGGGGCCCAGGTTTACTAACAATTTGCTATGATA
ATGGCACTGGCTTCGAAGCTGAGAGATCTTCCTATCTCAGAGAGAAGGGG
ATCCATCAGAATTAATTCCTTCTTTACCACTTGCATTCTCAGTGCACACC
AAATGAGGTGGCAGGCTGCAGTCGAAAGTACACTTTAATTAGTTCCATAG
GGTTATCAGAGGATAGGCTGGTCAGAACAAGGGCAGAGTGGGTTCTTAGA
GCAGTACTTTTACCAAATCCTGTAAAGGTGGGCTCCTTAGAGCCAAAAGT
TATCTCTCTGTTGAACGTACTTATGCAATCTCAATCTCTCTCCAGGTAGC
AGAATCACTGGTTTGCTAGTGCACACCGAACAAGATCAATATGCCTCGGG
GTCAGAAAAAAAGGCTCAATGCTGGAGGAAAATGCCACCAGGCTAGAGGT
GAGACCCATTATCTCCAGGGTGCCCAGGCCCCTGCAGCAGAGGAGAAAAG
CCATTTTCCCTCCATTTTCTCCTCATTTGGGGGGTGACTTACCACTAAGG
AATTTGCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_h16.g1 MSMg01no458_h16.g1 CHROMAT_FILE:
MSMg01no458_h16.g1 PHD_FILE: MSMg01no458_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:05 2005
         (333 letters)



>mm_chrX_83574008_83574740
          Length = 733

 Score =  642 bits (332), Expect = 0.0
 Identities = 332/332 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   taccacttgcattctcagtgcacaccaaatgaggtggcaggctgcagtcgaaagtacact 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 taccacttgcattctcagtgcacaccaaatgaggtggcaggctgcagtcgaaagtacact 474

                                                                       
Query: 62  ttaattagttccatagggttatcagaggataggctggtcagaacaagggcagagtgggtt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttaattagttccatagggttatcagaggataggctggtcagaacaagggcagagtgggtt 414

                                                                       
Query: 122 cttagagcagtacttttaccaaatcctgtaaaggtgggctccttagagccaaaagttatc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cttagagcagtacttttaccaaatcctgtaaaggtgggctccttagagccaaaagttatc 354

                                                                       
Query: 182 tctctgttgaacgtacttatgcaatctcaatctctctccaggtagcagaatcactggttt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tctctgttgaacgtacttatgcaatctcaatctctctccaggtagcagaatcactggttt 294

                                                                       
Query: 242 gctagtgcacaccgaacaagatcaatatgcctcggggtcagaaaaaaaggctcaatgctg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gctagtgcacaccgaacaagatcaatatgcctcggggtcagaaaaaaaggctcaatgctg 234

                                           
Query: 302 gaggaaaatgccaccaggctagaggtgagacc 333
           ||||||||||||||||||||||||||||||||
Sbjct: 233 gaggaaaatgccaccaggctagaggtgagacc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)