CCCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTAAATC
CGCGGAATTCCTTGCCCCTTGCCTTGCTTTGGCGAGTAGATAAGACAGAT
GTGGCAGCCTGCTGGTTTCAAGGCTAAGCACTAAGAGGCCTTGCCTGGAG
TCTGCTTGTTCTCTTGAGACTCTGCCAAGAAAGAGTTGCCTGGACTAACT
CACGTTCTTGAGTGGAGGATGAGTAATATGCAGAGGATGGCCCAGCTAGA
TCATCTAGCCCCAAGCGACTTGGAGACGGGTGAACTAACCTAATGCCCAC
TGTTTTAGTGTGATATGTCCCTGAAATGTCATGTTTTTCTTTTGTTCATA
TTGTTATATGTCATAAATTTTGAATTTTGGAGAGAAAAATGCATTGAAGA
CCATGGCTAGGAGAATAGAAGCTGAAGCTTGAATGTGAATAGGAGACCCT
GTTGGACAGTATAATCTGGAAGTGTTTACATCTGTGCTTCTGAGGAAGAG
TGGAGAAGATGACAAAGAAAGCAAGCTACAGTACAGGAAAACAAAACAAA
GCCATGATCTTTGGAACTGGAAAACCTGTGNTTAAATGTCATTTTTATTT
ATTACAAGCAATGTGGCTTTGAGCAAGAGGTTGACATTTCCTCTGCCTCA
GTTTTCTCATCTGCTAAATGGCAAAAAGTAGGACCTATGTTTACTTATAT
TTTGAGAAAAACCGGGCGCCTTTGTGCAGGAAAATTTTAATGGAGTAAAA
TCACAACGCTCCCATAAAAGT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGACTCAACAGTTAGCTCTA
GGGTATAAACTCAACAGGGCTGAGGATGTAGATTTGTATCAAAACAAGTA
TGTGTGTGAACAGTAGAGTAGCATCATGCATAATAGCCCTACAGGGAAAC
AATCAAAATATTCATCAACTAATGAATGGATAGATAAATTGTGGCATGGA
TTATACATATATATGTATATGATCTATGTATATATAATGGAGTATCATTA
GGCCATTATGGGAAATTAGGGCTGAAATATTCTACAGTGTAGACCAGCCT
TGACAACATAATGTTGATTGAAAAGTGTCAGGCCCAAAACATCAGATTGC
GTGATTCCATTTCCAAGAAATTTTCAAAGCAGGTACATTTATAGTGACAG
GTCAATGGTTGCTAGGGATTCACGGAATGGGCAGAAGACAGTGATGATGG
ACAGATGCAGCTGTTTTTTAGAAGTAATGAAATTGTTCTACAATAGAGTG
TGGCAGCGATCCTGTGGATATAACAATGAGTTATTCAGTTTAAATGGGTA
AGTTGTATGATATGTCAATTTTATTTTGATAAAGCTGTTTCATTTAAAAA
ACAAAGAATGAAATGGCTTCTGATTCCCTCACAAAAACCCTTGCCTAAAG
ATGTGAAGCTATTCAAAAATTCCCAGTGCTCCTGCCAATTCAAGGGACAC
AAAAGCAGGCTTCTATTTTATGAA

Query= MSMg01no458_p22.b1 MSMg01no458_p22.b1 CHROMAT_FILE:
MSMg01no458_p22.b1 PHD_FILE: MSMg01no458_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:44 2005
         (517 letters)



>mm_chrX_165381075_165381991
          Length = 917

 Score =  919 bits (475), Expect = 0.0
 Identities = 512/545 (93%), Gaps = 32/545 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgccccttgccttgctttggcgagtagataagacagatgtggcagcctgctg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gaattccttgccccttgacttgctttggcgagtagataagacagatgtggcagcctgctg 232

                                                                       
Query: 65  gtttcaaggctaagcactaagaggccttgcctggagtctgcttgttctcttgagactctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gtttcaaggctaagcactaagaggccttgcctggagtctgcttgttctcttgagactctg 292

                                                                       
Query: 125 ccaagaaagagttgcctggactaactcacgttcttgagtggaggatgagtaatatgcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ccaagaaagagttgcctggactaactcacgttcttgagtggaggatgagtaatatgcaga 352

                                                                       
Query: 185 ggatggcccagctagatcatctagccccaagcgacttggagacgggtgaactaacctaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggatggcccagctagatcatctagccccaagcgacttggagacgggtgaactaacctaat 412

                                                                       
Query: 245 gcccactgttttagtgtgatatgtccctgaaatgtcatgtttttcttttgttcatattgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcccactgttttagtgtgatatgtccctgaaatgtcatgtttttcttttgttcatattgt 472

                                                                       
Query: 305 tatatgtcataaattttgaattttggagagaaaaatgcattgaagaccatggctaggaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tatatgtcataaattttgaattttggagagaaaaatgcattgaagaccatggctaggaga 532

                                                                       
Query: 365 atagaagctgaagcttgaatgtgaataggaga---------------------------- 396
           ||||||||||||||||||||||||||||||||                            
Sbjct: 533 atagaagctgaagcttgaatgtgaataggagaatagaagctgaagcttgaatgtgaatag 592

                                                                       
Query: 397 ----ccctgttggacagtataatctggaagtgtttacatctgtgcttctgaggaagagtg 452
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gagaccctgttggacagtataatctggaagtgtttacatctgtgcttctgaggaagagtg 652

                                                                       
Query: 453 gagaagatgacaaagaaagcaagctacagtacaggaaaacaaaacaaagccatgatcttt 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gagaagatgacaaagaaagcaagctacagtacaggaaaacaaaacaaagccatgatcttt 712

                
Query: 513 ggaac 517
           |||||
Sbjct: 713 ggaac 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)