BAC Information

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BAC

Clone NameMSMg01-461M12
ChromosomeX (Build37)
Map Location 121,340,930 - 121,341,159
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461M12.T7 (MSMg01no461_m12.b1)MSMg01-461M12.TJ (MSMg01no461_m12.g1)
ACCAG546824AG546825
length751780
length of high quality
(start - end)
242 (76 - 317)241 (81 - 321)
definitionCHROMAT_FILE: MSMg01no461_m12.b1 PHD_FILE: MSMg01no461_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:31 2005CHROMAT_FILE: MSMg01no461_m12.g1 PHD_FILE: MSMg01no461_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCATCTAAATTTGCGGCGCTANANGAATCACTATTTCACACAATCCG
CGGAATTCTTTGTTGACATCTGACACCCCATTTTAATGGGGTTATTTGAA
TTTCTGGATTTCATCTTCTTGAGCTCTGAATATATTGGATATTAGCCCCC
TATCAGATTTAGGACTGGTATAAATTCTTTCCCAATCTGTTGGTGGCCTT
TTTGTTTTATTGACAGTATCTTTTGCCCTACAGAGGCTTTGCAATTTTAT
TTTTTCCCATTTGTCGACTCTTGATCTTACAGCACAGGCCATTGCTGTTC
TGTATAGGAATATATTTCCTGCGTCCATATCTTCAAGGTTTTTCCCCACT
TTCTCCTGTATAAATTTAAATGCCTCTCGTTTTATGTGGAGCTCTTTGAT
CCACTTAGACTTGAGCTCCCCCCAAGGAGATAATAACGGATCATATCTCA
TTCTTCCACTTGATAACCGCCATGTTGTGTCAGCTCCATTTTTTTAAAAT
GTTGTCCCCGTTCCCCTGGATGTTTTCTACTCCCTTGCCCTAAATTTAGC
ATCTTTAAGCTTTGTTTTTCCTCTTTCCTCCTCTTTATTTCTATTTCGCT
TTTTTTTCCCTGTCTCCTCTCTTCCCTCTCTCTCTCTCACTTCTTTTTCT
TTTTTTTTTTTTCTTATCCCCTTCCTTATTCCCCTTTCTTTTCCTCGCTC
TTTTTTCTTGTTTTTTTTGTTGCTATCTTCCCTTCAATTTTTTTTCCCCT
N
TTTCTGAATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACAGCCAGGGCTATAC
AGAGGAACTCTGTCTCAAAAAAAAAAAAGAAAAAAAAAAATCCAAAAACA
AACAAATAAAAAAAAAACCTAACCCAAACAAAACAAAACAAAATAAAACA
AAACAAAATCAGCCCCCCAAAAATACTAAAAAACCAAAAATCATTAAAAA
AAAAACCTTTAAAGCCTAAAAAAAAAAAACCCAAACCCTGAAAAACACTA
ATATCCTTAAAAAAAAAAAATATTTTATTTCAAGAACCCAAAACTGACTC
TAAAACTCTGTTTTGTTGTTGTTCTTGTTGTTGGTTTGTTTTGTTTTGTT
GTGCTCCTGCAACCCGTTTCTATTCCCCCCCCCCCTGTTTGCCCTATCCC
TAATATATGCAATCGATGCAGCGTCCTAACACCTATAATTTCTCTTTATT
TTGTCTATATACGATGACTTTTTTCCCCTGTCTTTGACCGCCTTTACCTT
TTTTATTTTCTACCCCCTGTTTCGCATTTTTCCTTCTCCCCCTTTTACTC
AGTGCTACTTTCCCCACACACTTTCTCCCATTTCTATTCTTACCCTACCA
TTTTTACTCCCTCCCCACTCTTATATCTTTCTCTTTTTTATCACCCCCTC
CGCCTCCTACCTTCCTATTCCGCCCCGATTTTTTCACTTCACATTTTCGT
TCCTATGCTCTTACTTTTTTCCTCTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_m12.g1 MSMg01no461_m12.g1 CHROMAT_FILE:
MSMg01no461_m12.g1 PHD_FILE: MSMg01no461_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:31 2005
         (241 letters)



>mm_chrX_121340601_121341241
          Length = 641

 Score =  381 bits (197), Expect = e-110
 Identities = 225/237 (94%), Gaps = 8/237 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   gacagccagggctatacagaggaactctgtctcaaaaaaaaaaaagaaaaaaaaaaatcc 63
           |||||||||||||||||||||||||||||||||| ||||||     ||||||||||||||
Sbjct: 559 gacagccagggctatacagaggaactctgtctcagaaaaaa-----aaaaaaaaaaatcc 505

                                                                       
Query: 64  aaaaacaaacaaataaaaaaaaaacctaacccaaacaaaacaaaacaaaataaaacaaaa 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaaacaaacaaat-aaaaaaaaacctaacccaaacaaaacaaaacaaaataaaacaaaa 446

                                                                       
Query: 124 caaaatcagccccccaaaaatactaaaaaaccaaaaatcattaaaaaaaaaa-cctttaa 182
           ||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 caaaaccagcccccccaaaatactaaaaaaccaaaaatcattaaaaaaaaaaacctttaa 386

                                                                    
Query: 183 agcctaaaaaaaaaaaacccaaaccctgaaaaacactaatatccttaaaaaaaaaaa 239
           ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 385 agcctaaaaaaaaaaaacc-aaaccctgaaaaaccctaatatccttaaaaaaaaaaa 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)